Ss1.1-rmed21c_o1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCACGACACGAAGTGCGGGAGATCGAGCAGCGACACACCATGGATGGCCCTCGGCAAGA GGCAGCTTTAGATGAGGAGGAGGACCTGGTGATCATTTATAACAGAGTCCCCAAGACGGC GAGCACCTCTTTCACCAACATCGCCTACGACCTGTGCGCCAAGAACAAGTACCACGTGCT CCACATCAACACCACCAAAAATAACCCCGTGATGTCGCTGCAGGACCAGGTGCGCTTTGT AAAGAATATAACGTCCTGGAAAGAGATGAAACCAGGGTTTTATCATGGGCACGTTTCTTA TTTGGATTTTGCAAAGTTTGGGGTGAAGAAGAAGCCAATCTACATTAATGTGGTCAGGGA CCCCATCGAAAGGCTGGTTTCTTACTATTACTTCCTGAGATTCGGAGACGACTACAGACC AGGACTGAGAAGACGAAAACAAGGAGACAAAAAGACGTTTGATGAGTGTGTGGCCGAGGG CGGTTCCGACTGTGCTCCAGAGAAGCTCTGGCTCCAGATCCCCTTCTTCTGTGGCCACAG CTCGGAATGCTGGAATGTCGGAAGCAGGTGGGCGATGGATCAAGCCAAGTACAATCTAAT CAATGAGTACTTTCTGGTGGGGGTGACTGAAGAGCTGGAAGATTTCGTCATGCTGCTGGA GGCGGCTTTGCCCCGATTCTTCAGGGGCGCCACGGAACTCTACCGAACAGGGAAGAAATC CCATCTGAGGAAAACCACGGAGAAGAAACTCCCCACCAAACAGACCATCGCGAAGCTGCA GCAGTCGCACATCTGGAAGATGGAGAACGAGTTTTACGAGTTTGCGCTGGAGCAGTTCCA GTTCATCCGAGCCCACGCCGTGCGCGAGAAGGACGGGGACCTCTTCATCCTGGCCCAGAA CTTCTTCTATGAAAAGATTTACCCCAAGTCGAACTGAGCGCGGGCGGCCGTGAGGTTCCC GACCCGCCTCCCGCTCCGTCCTCAGCGCCGCGGCCCGGCTGGCGGATGGGCGCAGGAGCG GGCTCGTCCGGGGGGAGCCGGGCTGGGACACGGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCACGACACGAAGTGCGGGAGATCGAGCAGCGACACACCATGGATGGCCCTCGGCAAGA GGCAGCTTTAGATGAGGAGGAGGACCTGGTGATCATTTATAACAGAGTCCCCAAGACGGC GAGCACCTCTTTCACCAACATCGCCTACGACCTGTGCGCCAAGAACAAGTACCACGTGCT CCACATCAACACCACCAAAAATAACCCCGTGATGTCGCTGCAGGACCAGGTGCGCTTTGT AAAGAATATAACGTCCTGGAAAGAGATGAAACCAGGGTTTTATCATGGGCACGTTTCTTA TTTGGATTTTGCAAAGTTTGGGGTGAAGAAGAAGCCAATCTACATTAATGTGGTCAGGGA CCCCATCGAAAGGCTGGTTTCTTACTATTACTTCCTGAGATTCGGAGACGACTACAGACC AGGACTGAGAAGACGAAAACAAGGAGACAAAAAGACGTTTGATGAGTGTGTGGCCGAGGG CGGTTCCGACTGTGCTCCAGAGAAGCTCTGGCTCCAGATCCCCTTCTTCTGTGGCCACAG CTCGGAATGCTGGAATGTCGGAAGCAGGTGGGCGATGGATCAAGCCAAGTACAATCTAAT CAATGAGTACTTTCTGGTGGGGGTGACTGAAGAGCTGGAAGATTTCGTCATGCTGCTGGA GGCGGCTTTGCCCCGATTCTTCAGGGGCGCCACGGAACTCTACCGAACAGGGAAGAAATC CCATCTGAGGAAAACCACGGAGAAGAAACTCCCCACCAAACAGACCATCGCGAAGCTGCA GCAGTCGCACATCTGGAAGATGGAGAACGAGTTTTACGAGTTTGCGCTGGAGCAGTTCCA GTTCATCCGAGCCCACGCCGTGCGCGAGAAGGACGGGGACCTCTTCATCCTGGCCCAGAA CTTCTTCTATGAAAAGATTTACCCCAAGTCGAACTGAGCGCGGGCGGCCGTGAGGTTCCC GACCCGCCTCCCGCTCCGTCCTCAGCGCCGCGGCCCGGCTGGCGGATGGGCGCAGGAGCG GGCTCGTCCGGGGGGAGCCGGGCTGGGACACGGACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 317-454, gnl|bosTau2|chr3 (41805652-41805515) | |
| 317-454, gnl|canFam2|chr6 (64202894-64202731) | |
| 317-454, gnl|danRer3|chrUn (127531294-127531443) | |
| 317-454, gnl|dasNov1|scaffold_4746 (48455-48292) | |
| 317-454, gnl|echTel1|scaffold_106381 (1036-873) | |
| 317-454, gnl|fr1|chrUn (88405560-88405704) | |
| 317-454, gnl|galGal2|chr8 (16175221-16175062) | |
| 317-454, gnl|hg17|chr1 (87270227-87270390) | |
| 317-454, gnl|Hg17|chr1 (87270236-87270373) | |
| 317-454, gnl|loxAfr1|scaffold_134039 (4507-4344) | |
| 317-454, gnl|mm7|chr3 (144340477-144340323) | |
| 317-454, gnl|Mm7|chr3 (144340466-144340329) | |
| 317-454, gnl|monDom2|scaffold_123 (988193-988355) | |
| 317-454, gnl|oryCun1|scaffold_208869 (52821-52658) | |
| 317-454, gnl|panTro1|chr1 (85930219-85930382) | |
| 317-454, gnl|rheMac2|chr1 (89793123-89793286) | |
| 317-454, gnl|rn3|chr2 (242623445-242623292) | |
| 317-454, gnl|tetNig1|chr15 (3561538-3561688) | |
| 317-454, gnl|xenTro1|scaffold_1460 (40692-40854) | |
| 709-938, gnl|bosTau2|chr3 (41794424-41794195) | |
| 709-938, gnl|canFam2|chr6 (64187780-64187544) | |
| 709-938, gnl|danRer3|chrUn (127535066-127535294) | |
| 709-938, gnl|dasNov1|scaffold_2376 (128510-128274) | |
| 709-938, gnl|echTel1|scaffold_292160 (39832-40068) | |
| 709-938, gnl|fr1|chrUn (88406219-88406449) | |
| 709-938, gnl|galGal2|chr8 (16169613-16169377) | |
| 709-938, gnl|hg17|chr1 (87282171-87282407) | |
| 709-938, gnl|Hg17|chr1 (87282172-87282401) | |
| 709-938, gnl|loxAfr1|scaffold_1204 (93595-93359) | |
| 709-938, gnl|mm7|chr3 (144327778-144327543) | |
| 709-938, gnl|Mm7|chr3 (144327775-144327546) | |
| 709-938, gnl|monDom2|scaffold_123 (1003720-1003955) | |
| 709-938, gnl|panTro1|chr1 (85942176-85942412) | |
| 709-938, gnl|rheMac2|chr1 (89805079-89805315) | |
| 709-938, gnl|rn3|chr2 (242612008-242611773) | |
| 709-938, gnl|tetNig1|chr15 (3562603-3562830) | |
| 709-938, gnl|xenTro1|scaffold_1460 (51011-51247) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 317-454, gnl|bosTau2|chr3 (41805652-41805515) | |
| 317-454, gnl|canFam2|chr6 (64202894-64202731) | |
| 317-454, gnl|danRer3|chrUn (127531294-127531443) | |
| 317-454, gnl|dasNov1|scaffold_4746 (48455-48292) | |
| 317-454, gnl|echTel1|scaffold_106381 (1036-873) | |
| 317-454, gnl|fr1|chrUn (88405560-88405704) | |
| 317-454, gnl|galGal2|chr8 (16175221-16175062) | |
| 317-454, gnl|hg17|chr1 (87270227-87270390) | |
| 317-454, gnl|Hg17|chr1 (87270236-87270373) | |
| 317-454, gnl|loxAfr1|scaffold_134039 (4507-4344) | |
| 317-454, gnl|mm7|chr3 (144340477-144340323) | |
| 317-454, gnl|Mm7|chr3 (144340466-144340329) | |
| 317-454, gnl|monDom2|scaffold_123 (988193-988355) | |
| 317-454, gnl|oryCun1|scaffold_208869 (52821-52658) | |
| 317-454, gnl|panTro1|chr1 (85930219-85930382) | |
| 317-454, gnl|rheMac2|chr1 (89793123-89793286) | |
| 317-454, gnl|rn3|chr2 (242623445-242623292) | |
| 317-454, gnl|tetNig1|chr15 (3561538-3561688) | |
| 317-454, gnl|xenTro1|scaffold_1460 (40692-40854) | |
| 709-938, gnl|bosTau2|chr3 (41794424-41794195) | |
| 709-938, gnl|canFam2|chr6 (64187780-64187544) | |
| 709-938, gnl|danRer3|chrUn (127535066-127535294) | |
| 709-938, gnl|dasNov1|scaffold_2376 (128510-128274) | |
| 709-938, gnl|echTel1|scaffold_292160 (39832-40068) | |
| 709-938, gnl|fr1|chrUn (88406219-88406449) | |
| 709-938, gnl|galGal2|chr8 (16169613-16169377) | |
| 709-938, gnl|hg17|chr1 (87282171-87282407) | |
| 709-938, gnl|Hg17|chr1 (87282172-87282401) | |
| 709-938, gnl|loxAfr1|scaffold_1204 (93595-93359) | |
| 709-938, gnl|mm7|chr3 (144327778-144327543) | |
| 709-938, gnl|Mm7|chr3 (144327775-144327546) | |
| 709-938, gnl|monDom2|scaffold_123 (1003720-1003955) | |
| 709-938, gnl|panTro1|chr1 (85942176-85942412) | |
| 709-938, gnl|rheMac2|chr1 (89805079-89805315) | |
| 709-938, gnl|rn3|chr2 (242612008-242611773) | |
| 709-938, gnl|tetNig1|chr15 (3562603-3562830) | |
| 709-938, gnl|xenTro1|scaffold_1460 (51011-51247) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| med (0.116252) |