Non-Coding RNA Search

Ss1.1-rmed21c_o16.5

Sequence:


               
               GACAGATCATACAGTTGTCAGACTGGGGTATAAAATCAATTACTAGACTCTGAATGAGCC
TGGGGACTTTCCTGTGACCCATACAATATAGCACAGCTGTTTCAGTTCTTGGAGATCATG
ACGACTATCTTGACACAAAGGACACTGTAGATTTACTTGTGTGTATAAGGTGGGCTTAGG
ATTCTTGGTTGAGGCTGACTTTGAGGTGAGATATTATAATAACCATAATTACTGCCTTGT
ATTAAATGTTCTCACAAATAGCAGGACTAAAGATTAGGAAAAGAATATAGGTCTTAGTTA
AATGGCTGGAGAGTTTCAACTTCAGATCATTTTTAATGGAGATGCTTTACTTTCTTATAC
TCAATGATCATTATAGGAGATCTGTAATAAACTTTAAAAGAATTGTATTTTTTGTTACCT
AAAAATCTTGACTCATATTATTGCATATTTTCTTCGTATACTTATTTATAGGTAGACAGG
AATGGTGGTAGTGTGTGTAAGAAAGGAAAGAAACTCTGAAGATGTGATGCTTTGATTGTC
AAAAAGAAACCTGACAAATCCTGTTGGTTTCCTTTCCAGATCCGACGTATCCTGAAGGGA
AAGTCCATTCAGCAGAGAGCTCCACCGTATTAGCTCCATTGACTTGGAGCTGGCAATACT
CACTGTCAGTTAGGCAGTCCTAATGTATCTGTACATAGACCATTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGATCATACAGTTGTCAGACTGGGGTATAAAATCAATTACTAGACTCTGAATGAGCC
TGGGGACTTTCCTGTGACCCATACAATATAGCACAGCTGTTTCAGTTCTTGGAGATCATG
ACGACTATCTTGACACAAAGGACACTGTAGATTTACTTGTGTGTATAAGGTGGGCTTAGG
ATTCTTGGTTGAGGCTGACTTTGAGGTGAGATATTATAATAACCATAATTACTGCCTTGT
ATTAAATGTTCTCACAAATAGCAGGACTAAAGATTAGGAAAAGAATATAGGTCTTAGTTA
AATGGCTGGAGAGTTTCAACTTCAGATCATTTTTAATGGAGATGCTTTACTTTCTTATAC
TCAATGATCATTATAGGAGATCTGTAATAAACTTTAAAAGAATTGTATTTTTTGTTACCT
AAAAATCTTGACTCATATTATTGCATATTTTCTTCGTATACTTATTTATAGGTAGACAGG
AATGGTGGTAGTGTGTGTAAGAAAGGAAAGAAACTCTGAAGATGTGATGCTTTGATTGTC
AAAAAGAAACCTGACAAATCCTGTTGGTTTCCTTTCCAGATCCGACGTATCCTGAAGGGA
AAGTCCATTCAGCAGAGAGCTCCACCGTATTAGCTCCATTGACTTGGAGCTGGCAATACT
CACTGTCAGTTAGGCAGTCCTAATGTATCTGTACATAGACCATTTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42716255|gb|AAS37659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42716255|gb|AAS37659.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               559-708, - strand, RNAz p=0.979711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               559-708, - strand, RNAz p=0.979711

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-708, gnl|bosTau2|chr11 (21553987-21553265)
               

               
               1-708, gnl|Hg17|chr3 (103060264-103060985)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr11 (21553987-21553265)
               

               
               1-708, gnl|Hg17|chr3 (103060264-103060985)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               med (0.116252)

	1-708, gnl\|bosTau2\|chr11 (21553987-21553265)
	1-708, gnl\|Hg17\|chr3 (103060264-103060985)