Non-Coding RNA Search

Ss1.1-rmed22c_o14.5

Sequence:


               
               GACTCCCTAGGTGCATCTTCTTTGCATCATTGGGAGGCTCTGAGACTGGTCCCTTTTGGT
CCTAAGAATCCCAAGGTCTTCTGGGAGCTTCCAGCATGTTAATTAGCATCATTTGCATAC
TGACATCCCTTTTGGTTTCCTTTTTTTCTCCATCAGGCTTCTGTTCATTCTTTCAACTTG
TGTTTCTTTTTTACTGAGGAGTTAGTCCCTATTGGTCTGGTCCTTGTATCACACTTTTCA
TTTGCATGACATTACTTGCAGGTGGTAGGGAGCCTGGGCATTGGGGGTGTCAGGCTGTTC
TGGCCCCCAGAATTGCCCTCTCCGAGCCCCTCCAGTCCAGTTTGCCTCCCCTTCCCCGAT
TTTCCAAACCTCTTGTCCCTCCTTCCCCTCCCCCCAGCTGGTGTGTACGTGTCTTGGAGT
TCAGTGTGTTATGATGGACCAATAATTCTGCCACTTGGAGTCTCTCCCCACATTCCTGCT
CCCCAGTTTTCAAGTGGGGTGCTCAATTGACATTCCCATGGGGTCTCCCTCCCTCCCATC
TGCCTGACCCGCCTCCTCCTCCTCCCAGCAGGAGAGTTGGGGGTTGGCCACAATCTGATT
TTTCTTGGGAGAGGTGGCTACCTGTGTGTGTGGGGTCATCACTGCCTTGGGGAGGAGTGG
GGCAGGGCAAAGAATCCTCCCAATTCCTGCCTGAAATCTCTGGCCCCACCCCTGCTGGGG
GTTTGACTGAAAGCCCTCCTCACCCATTTGGGGGGTGTTGCCCTATCAGCTCCTCTGATT
GCCCCCCTGAATTCGGGGCAGGGGTTTTAGTCACTGCCAATGTGTGTGTGGGACTTGCCG
GAAGGTGGTGATTCTTTCCCCTCTCCAGGGTGGTGGAGCCCAGAGAGAGCTGTCTCCTCC
TTAGGTGAAATGATAAGGAAGGATGTAACGTCTTTTTTAATGGCACAATTTTGGGGGTCT
GAGGGTGCAGTCCCTTAACCTGCCACTGGAAGGGACCGCCTAAACTCTTCCCCCCACACT
CAAAGGTTTCTGTGTGGAGGGGGAGCAGGGAGATCAAAGCTGTGTTGTGAAAGGGTAGGG
AAAGATGCTGGGGGTGGGGGTGCTGTGTTCTAGACCCCCTTATTATCCCAGTGTCCCCTG
CCCCGCCTTCCCTCACCCCATGCCCCCAATTCTGTGGCGCATCCAGATTGTGAAAATGTA
CAATAAATGTGTAATGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCCCTAGGTGCATCTTCTTTGCATCATTGGGAGGCTCTGAGACTGGTCCCTTTTGGT
CCTAAGAATCCCAAGGTCTTCTGGGAGCTTCCAGCATGTTAATTAGCATCATTTGCATAC
TGACATCCCTTTTGGTTTCCTTTTTTTCTCCATCAGGCTTCTGTTCATTCTTTCAACTTG
TGTTTCTTTTTTACTGAGGAGTTAGTCCCTATTGGTCTGGTCCTTGTATCACACTTTTCA
TTTGCATGACATTACTTGCAGGTGGTAGGGAGCCTGGGCATTGGGGGTGTCAGGCTGTTC
TGGCCCCCAGAATTGCCCTCTCCGAGCCCCTCCAGTCCAGTTTGCCTCCCCTTCCCCGAT
TTTCCAAACCTCTTGTCCCTCCTTCCCCTCCCCCCAGCTGGTGTGTACGTGTCTTGGAGT
TCAGTGTGTTATGATGGACCAATAATTCTGCCACTTGGAGTCTCTCCCCACATTCCTGCT
CCCCAGTTTTCAAGTGGGGTGCTCAATTGACATTCCCATGGGGTCTCCCTCCCTCCCATC
TGCCTGACCCGCCTCCTCCTCCTCCCAGCAGGAGAGTTGGGGGTTGGCCACAATCTGATT
TTTCTTGGGAGAGGTGGCTACCTGTGTGTGTGGGGTCATCACTGCCTTGGGGAGGAGTGG
GGCAGGGCAAAGAATCCTCCCAATTCCTGCCTGAAATCTCTGGCCCCACCCCTGCTGGGG
GTTTGACTGAAAGCCCTCCTCACCCATTTGGGGGGTGTTGCCCTATCAGCTCCTCTGATT
GCCCCCCTGAATTCGGGGCAGGGGTTTTAGTCACTGCCAATGTGTGTGTGGGACTTGCCG
GAAGGTGGTGATTCTTTCCCCTCTCCAGGGTGGTGGAGCCCAGAGAGAGCTGTCTCCTCC
TTAGGTGAAATGATAAGGAAGGATGTAACGTCTTTTTTAATGGCACAATTTTGGGGGTCT
GAGGGTGCAGTCCCTTAACCTGCCACTGGAAGGGACCGCCTAAACTCTTCCCCCCACACT
CAAAGGTTTCTGTGTGGAGGGGGAGCAGGGAGATCAAAGCTGTGTTGTGAAAGGGTAGGG
AAAGATGCTGGGGGTGGGGGTGCTGTGTTCTAGACCCCCTTATTATCCCAGTGTCCCCTG
CCCCGCCTTCCCTCACCCCATGCCCCCAATTCTGTGGCGCATCCAGATTGTGAAAATGTA
CAATAAATGTGTAATGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50949285|emb|CAH10733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50949285|emb|CAH10733.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               455-574, - strand, RNAz p=0.949236
               

               
               652-1165, + strand, RNAz p=0.995976

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-574, - strand, RNAz p=0.949236
               

               
               652-1165, + strand, RNAz p=0.995976

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL050223, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL050223, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               296-1221, gnl|bosTau2|chr2 (77487932-77487004)
               

               
               296-1221, gnl|Hg17|chr17 (8004126-8003195)
               

               
               296-1221, gnl|Mm7|chr11 (69173001-69173955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               296-1221, gnl|bosTau2|chr2 (77487932-77487004)
               

               
               296-1221, gnl|Hg17|chr17 (8004126-8003195)
               

               
               296-1221, gnl|Mm7|chr11 (69173001-69173955)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               ecc (0.575175)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               med (0.232504)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               ecc (0.575175)
               

               
               elu (0.385356)
               

               
               nje (0.33184)
               

               
               med (0.232504)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	455-574, - strand, RNAz p=0.949236
	652-1165, + strand, RNAz p=0.995976

	296-1221, gnl\|bosTau2\|chr2 (77487932-77487004)
	296-1221, gnl\|Hg17\|chr17 (8004126-8003195)
	296-1221, gnl\|Mm7\|chr11 (69173001-69173955)

	hyp (0.85702)
	fcc (0.791139)
	ebs (0.709807)
	fbs (0.701385)
	ecc (0.575175)
	elu (0.385356)
	nje (0.33184)
	med (0.232504)
	fhi (0.169578)
	nco (0.161734)
	cag (0.151194)
	pty (0.142714)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	eru (0.120048)
	eje (0.0988338)