Ss1.1-rmed22c_o24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCGGCCGACCTGCAGCTGGGGCACAGAAATTCTCAAGTGAAACCAAGAGTCTGTAAGC CCTGGCACCTCTTCCCAGAGAAGATGAAGGATATTGACATAGGAAAAGAATATATCATCC CCAGCCCTGGTTACAGAAACGTCCGGGAGAGAACCAGCAATTCGGGGCAACAGAGGGACC GAGAGGACTCCAAGTACAAGAGAACTCAACTGCTGGATTGCCAGGATGCCTTGGAAACAG CAGCCCGAGCTGAGGGCCTTTCGCTGGATGCCTCCATGCATTCCCAGCTCAGAATCCTGG ATGAGGAACATCCCAAGGGAAAATACCATCATAGCTTAAGCGCTCTGAAGCCCATCCGGA CCACTTCCAAACACCAGCACCCAGTGGACAATGCTGGGCTCTTCTCGTGTATGACGTTTT CTTGGCTTTCTCCTCTGGCTCGCATAGCCCACAGGAAGGGGGAGCTCTTAATGGAGGACG TGTGGTCTCTGTCCAAGCATGAGTCTTCCGAGGTGAACTGCAGAAGACTAGAGAGGCTGT GGCAAGAGGAGCTGAATGAAGTCGGGCCAGACGCTGCTTCCCTCCGGAGGGTTGTGTGGA CCTTCTGCCGTACCAGGCTCATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCGGCCGACCTGCAGCTGGGGCACAGAAATTCTCAAGTGAAACCAAGAGTCTGTAAGC CCTGGCACCTCTTCCCAGAGAAGATGAAGGATATTGACATAGGAAAAGAATATATCATCC CCAGCCCTGGTTACAGAAACGTCCGGGAGAGAACCAGCAATTCGGGGCAACAGAGGGACC GAGAGGACTCCAAGTACAAGAGAACTCAACTGCTGGATTGCCAGGATGCCTTGGAAACAG CAGCCCGAGCTGAGGGCCTTTCGCTGGATGCCTCCATGCATTCCCAGCTCAGAATCCTGG ATGAGGAACATCCCAAGGGAAAATACCATCATAGCTTAAGCGCTCTGAAGCCCATCCGGA CCACTTCCAAACACCAGCACCCAGTGGACAATGCTGGGCTCTTCTCGTGTATGACGTTTT CTTGGCTTTCTCCTCTGGCTCGCATAGCCCACAGGAAGGGGGAGCTCTTAATGGAGGACG TGTGGTCTCTGTCCAAGCATGAGTCTTCCGAGGTGAACTGCAGAAGACTAGAGAGGCTGT GGCAAGAGGAGCTGAATGAAGTCGGGCCAGACGCTGCTTCCCTCCGGAGGGTTGTGTGGA CCTTCTGCCGTACCAGGCTCATCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 253-370, - strand, RNAz p=0.709726 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-370, - strand, RNAz p=0.709726 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 208-370, gnl|bosTau2|chr1 (51627466-51627304) | |
| 208-370, gnl|canFam2|chr34 (19923864-19924080) | |
| 208-370, gnl|danRer3|chr18 (34778766-34778583) | |
| 208-370, gnl|dasNov1|scaffold_112537 (4464-4297) | |
| 208-370, gnl|fr1|chrUn (70784178-70784386) | |
| 208-370, gnl|galGal2|chr9 (15101439-15101635) | |
| 208-370, gnl|hg17|chr3 (185189712-185189909) | |
| 208-370, gnl|Hg17|chr3 (185189878-185189716) | |
| 208-370, gnl|loxAfr1|scaffold_70714 (1563-1758) | |
| 208-370, gnl|mm7|chr16 (19955746-19955934) | |
| 208-370, gnl|Mm7|chr16 (19955909-19955748) | |
| 208-370, gnl|monDom2|scaffold_167 (1296722-1296918) | |
| 208-370, gnl|oryCun1|scaffold_193319 (671-467) | |
| 208-370, gnl|panTro1|chr2 (189136071-189136268) | |
| 208-370, gnl|rheMac2|chr2 (102688854-102688657) | |
| 208-370, gnl|rn3|chr11 (82801567-82801379) | |
| 208-370, gnl|xenTro1|scaffold_1143 (116873-116698) | |
| 524-624, gnl|bosTau2|chr1 (51624258-51624158) | |
| 524-624, gnl|canFam2|chr34 (19922681-19922846) | |
| 524-624, gnl|danRer3|chr18 (34784294-34784142) | |
| 524-624, gnl|dasNov1|scaffold_3955 (39655-39490) | |
| 524-624, gnl|echTel1|scaffold_311174 (30397-30232) | |
| 524-624, gnl|fr1|chrUn (70781301-70781471) | |
| 524-624, gnl|galGal2|chr9 (15100438-15100602) | |
| 524-624, gnl|hg17|chr3 (185188245-185188410) | |
| 524-624, gnl|Hg17|chr3 (185188410-185188310) | |
| 524-624, gnl|loxAfr1|scaffold_8326 (6055-6220) | |
| 524-624, gnl|mm7|chr16 (19954572-19954737) | |
| 524-624, gnl|Mm7|chr16 (19954737-19954637) | |
| 524-624, gnl|monDom2|scaffold_167 (1295511-1295676) | |
| 524-624, gnl|oryCun1|scaffold_98305 (653-818) | |
| 524-624, gnl|panTro1|chr2 (189134603-189134768) | |
| 524-624, gnl|rheMac2|chr2 (102690301-102690136) | |
| 524-624, gnl|rn3|chr11 (82802662-82802497) | |
| 524-624, gnl|tetNig1|chr1 (4891877-4892027) | |
| 524-624, gnl|xenTro1|scaffold_1143 (122327-122162) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 208-370, gnl|bosTau2|chr1 (51627466-51627304) | |
| 208-370, gnl|canFam2|chr34 (19923864-19924080) | |
| 208-370, gnl|danRer3|chr18 (34778766-34778583) | |
| 208-370, gnl|dasNov1|scaffold_112537 (4464-4297) | |
| 208-370, gnl|fr1|chrUn (70784178-70784386) | |
| 208-370, gnl|galGal2|chr9 (15101439-15101635) | |
| 208-370, gnl|hg17|chr3 (185189712-185189909) | |
| 208-370, gnl|Hg17|chr3 (185189878-185189716) | |
| 208-370, gnl|loxAfr1|scaffold_70714 (1563-1758) | |
| 208-370, gnl|mm7|chr16 (19955746-19955934) | |
| 208-370, gnl|Mm7|chr16 (19955909-19955748) | |
| 208-370, gnl|monDom2|scaffold_167 (1296722-1296918) | |
| 208-370, gnl|oryCun1|scaffold_193319 (671-467) | |
| 208-370, gnl|panTro1|chr2 (189136071-189136268) | |
| 208-370, gnl|rheMac2|chr2 (102688854-102688657) | |
| 208-370, gnl|rn3|chr11 (82801567-82801379) | |
| 208-370, gnl|xenTro1|scaffold_1143 (116873-116698) | |
| 524-624, gnl|bosTau2|chr1 (51624258-51624158) | |
| 524-624, gnl|canFam2|chr34 (19922681-19922846) | |
| 524-624, gnl|danRer3|chr18 (34784294-34784142) | |
| 524-624, gnl|dasNov1|scaffold_3955 (39655-39490) | |
| 524-624, gnl|echTel1|scaffold_311174 (30397-30232) | |
| 524-624, gnl|fr1|chrUn (70781301-70781471) | |
| 524-624, gnl|galGal2|chr9 (15100438-15100602) | |
| 524-624, gnl|hg17|chr3 (185188245-185188410) | |
| 524-624, gnl|Hg17|chr3 (185188410-185188310) | |
| 524-624, gnl|loxAfr1|scaffold_8326 (6055-6220) | |
| 524-624, gnl|mm7|chr16 (19954572-19954737) | |
| 524-624, gnl|Mm7|chr16 (19954737-19954637) | |
| 524-624, gnl|monDom2|scaffold_167 (1295511-1295676) | |
| 524-624, gnl|oryCun1|scaffold_98305 (653-818) | |
| 524-624, gnl|panTro1|chr2 (189134603-189134768) | |
| 524-624, gnl|rheMac2|chr2 (102690301-102690136) | |
| 524-624, gnl|rn3|chr11 (82802662-82802497) | |
| 524-624, gnl|tetNig1|chr1 (4891877-4892027) | |
| 524-624, gnl|xenTro1|scaffold_1143 (122327-122162) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| bla (0.124347) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| bla (0.124347) | |
| med (0.116252) | |
| cty (0.10408) |