Non-Coding RNA Search

Ss1.1-rmed23c_c16.5

Sequence:


               
               AGGGGGGACCATCTGCGCTAGAGCCTAGATAACGGGGGAGGCAGCAGCATGAGGGGGCAG
GACCTCGCCTGTGTGCGGGCGTCACGAGTTTCCACACGTGGACTCCTGATGCTATTTAAT
TTAAACACACACACACACACAATTTCCAAAGTGTGTCTGGACCACAAAAGTATGTGATGG
AAGCGCCAGCTCTAATCCAACCAGGGCACCTTCATGGTAGAAAATACTCCCCAGGCGTGC
AGGGTGGATTTGTGACTTTTCACGGTGGTTTCAAGGACAAATTGGGCTCTTTTTCCTGCT
GTTTTTGTGCTCAGCTTCTCAGACTGACACAAACTTTTTTACCCCCTTTGAATTTATTTT
GTTATTCTTATTTAAAAATATTTTTTAGTCATAGTCTATAATTTAGCACTTTAAAAAAAA
AATACATCTCAATCGAAGGCTACCTGGCCACTGGCTACTTTGGGATGGAGATTGAGAGAG
CAGTCCCTTCTCCCTGGTCTCCAGCTGCCTTTCTGCACGACAAAGGCATTTGATAGCATC
GCCCGGGAGGTCCTAGCTAGACCTAGAGCTGGAGCTTTATCAGATGCCAGGAGGCCCTTC
GGAAGGCTTTCAAAGGCCCATGCATGATCCTCCTCCCCTGCAGCCCTGATCTCTAAGAAC
CAAGTTCCCCGGGGACTTTTCCCACCACCCTTGGAAATCCATCTACTCAAGATACCTCCA
TTGTTTTTGCATTTCAAATTGGGGGGGAAGGGGATTAAACACTCCCAGTGACAAGAGATC
TGTTGTGAAACGAAACACCCCCCGTGTTAATAAGTTGGTTTGACCTTTGTTTTTTATGAG
CCGGGCCCCCTGTGCCTCTAGGATACTTGTATTGACTCTCATAGTTACCCTTTTAGTTTG
ACTGTGTTCTGTGAAAATTTGTAATTGGTTGAGAATCACTGTGGGCGTCCATTCTTATTC
AACTAAATCTCCACAGGTTTTTTGAGCTGGTGTGGATTAGTTTAACTCTTGTATTCAACC
ATTAGTGCTACCACCTTCTCACATTACAATACAATTACTGGAAGCAAGTACTGCATTTCC
TATGCAACAAAAAAGGAAAAATAAAAAATTGCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGGACCATCTGCGCTAGAGCCTAGATAACGGGGGAGGCAGCAGCATGAGGGGGCAG
GACCTCGCCTGTGTGCGGGCGTCACGAGTTTCCACACGTGGACTCCTGATGCTATTTAAT
TTAAACACACACACACACACAATTTCCAAAGTGTGTCTGGACCACAAAAGTATGTGATGG
AAGCGCCAGCTCTAATCCAACCAGGGCACCTTCATGGTAGAAAATACTCCCCAGGCGTGC
AGGGTGGATTTGTGACTTTTCACGGTGGTTTCAAGGACAAATTGGGCTCTTTTTCCTGCT
GTTTTTGTGCTCAGCTTCTCAGACTGACACAAACTTTTTTACCCCCTTTGAATTTATTTT
GTTATTCTTATTTAAAAATATTTTTTAGTCATAGTCTATAATTTAGCACTTTAAAAAAAA
AATACATCTCAATCGAAGGCTACCTGGCCACTGGCTACTTTGGGATGGAGATTGAGAGAG
CAGTCCCTTCTCCCTGGTCTCCAGCTGCCTTTCTGCACGACAAAGGCATTTGATAGCATC
GCCCGGGAGGTCCTAGCTAGACCTAGAGCTGGAGCTTTATCAGATGCCAGGAGGCCCTTC
GGAAGGCTTTCAAAGGCCCATGCATGATCCTCCTCCCCTGCAGCCCTGATCTCTAAGAAC
CAAGTTCCCCGGGGACTTTTCCCACCACCCTTGGAAATCCATCTACTCAAGATACCTCCA
TTGTTTTTGCATTTCAAATTGGGGGGGAAGGGGATTAAACACTCCCAGTGACAAGAGATC
TGTTGTGAAACGAAACACCCCCCGTGTTAATAAGTTGGTTTGACCTTTGTTTTTTATGAG
CCGGGCCCCCTGTGCCTCTAGGATACTTGTATTGACTCTCATAGTTACCCTTTTAGTTTG
ACTGTGTTCTGTGAAAATTTGTAATTGGTTGAGAATCACTGTGGGCGTCCATTCTTATTC
AACTAAATCTCCACAGGTTTTTTGAGCTGGTGTGGATTAGTTTAACTCTTGTATTCAACC
ATTAGTGCTACCACCTTCTCACATTACAATACAATTACTGGAAGCAAGTACTGCATTTCC
TATGCAACAAAAAAGGAAAAATAAAAAATTGCTAAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-532, gnl|bosTau2|chr3 (56993082-56992543)
               

               
               1-532, gnl|Hg17|chr1 (61639295-61639888)
               

               
               1-532, gnl|Mm7|chr4 (97510397-97510906)
               


               
               721-1116, gnl|bosTau2|chr3 (56992364-56991972)
               

               
               721-1116, gnl|Hg17|chr1 (61640086-61640477)
               

               
               721-1116, gnl|Mm7|chr4 (97511081-97511474)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr3 (56993082-56992543)
               

               
               1-532, gnl|Hg17|chr1 (61639295-61639888)
               

               
               1-532, gnl|Mm7|chr4 (97510397-97510906)
               


               
               721-1116, gnl|bosTau2|chr3 (56992364-56991972)
               

               
               721-1116, gnl|Hg17|chr1 (61640086-61640477)
               

               
               721-1116, gnl|Mm7|chr4 (97511081-97511474)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               eru (0.240096)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-532, gnl\|bosTau2\|chr3 (56993082-56992543)
	1-532, gnl\|Hg17\|chr1 (61639295-61639888)
	1-532, gnl\|Mm7\|chr4 (97510397-97510906)

	721-1116, gnl\|bosTau2\|chr3 (56992364-56991972)
	721-1116, gnl\|Hg17\|chr1 (61640086-61640477)
	721-1116, gnl\|Mm7\|chr4 (97511081-97511474)

	eru (0.240096)
	nms (0.213858)
	cmu (0.186393)
	cut (0.169924)
	fat (0.147427)
	lnt (0.142308)
	che (0.136314)
	ssp (0.13552)
	sug (0.127291)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)