Non-Coding RNA Search

Ss1.1-rmed23c_c2.5

Sequence:


               
               CCTGGCCGTCTCCCACCGGCCTCCTTTTGTCTTTTCCTGCACCTCTGACTGTTTCCCTTA
GGACTGAGGTGTGGGCTAAGGGACGGGCCCTCAGTGAGGTAGCTGTAGGTGTCTAGCCGC
CTAAGCTTGGCCTCTCCCTATCTGTCTCTTTTGGGGACTAAGAAGCCAGACTTCCCAAGT
GCTCTGGAAGCCAATTCCTTATTTACCCAAAGACCTCAAATCTAAACTGCCCCAGTCTGC
ATCTCCTCCTAGCCCTTCTCCATTCCTCAAGGCTGTGTTTTCCATCTGCACTGATCCAGA
GCCGCTGGACATGTCCTTGCCACACTCCTCAAGGGCATCCTGCAGGCACTTGGCCATAGC
CTTGAGACATGGGGGGGAACCTGTCTTTGTATTGGTATCTTGATTCCTGACTCCTTTTAA
TCCCTAGAAAAACGCTGAGACTGTCCAGCACAGCCAAGATCTTTCTCACTGTTGTTTCTA
CGTCACCTGCTGCCCTTATCCCCCACCCCCACCTTGACAACAGCAAGCAAAGCAAACAAC
AAAAAAGCAGTCTTACTTGAGGAATTAGGTAGTAGGTAAGGGATGATCACATTGGAGTTC
GGAGTTAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCCGTCTCCCACCGGCCTCCTTTTGTCTTTTCCTGCACCTCTGACTGTTTCCCTTA
GGACTGAGGTGTGGGCTAAGGGACGGGCCCTCAGTGAGGTAGCTGTAGGTGTCTAGCCGC
CTAAGCTTGGCCTCTCCCTATCTGTCTCTTTTGGGGACTAAGAAGCCAGACTTCCCAAGT
GCTCTGGAAGCCAATTCCTTATTTACCCAAAGACCTCAAATCTAAACTGCCCCAGTCTGC
ATCTCCTCCTAGCCCTTCTCCATTCCTCAAGGCTGTGTTTTCCATCTGCACTGATCCAGA
GCCGCTGGACATGTCCTTGCCACACTCCTCAAGGGCATCCTGCAGGCACTTGGCCATAGC
CTTGAGACATGGGGGGGAACCTGTCTTTGTATTGGTATCTTGATTCCTGACTCCTTTTAA
TCCCTAGAAAAACGCTGAGACTGTCCAGCACAGCCAAGATCTTTCTCACTGTTGTTTCTA
CGTCACCTGCTGCCCTTATCCCCCACCCCCACCTTGACAACAGCAAGCAAAGCAAACAAC
AAAAAAGCAGTCTTACTTGAGGAATTAGGTAGTAGGTAAGGGATGATCACATTGGAGTTC
GGAGTTAAAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-370, + strand, RNAz p=0.999745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-370, + strand, RNAz p=0.999745

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC021228, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC021228, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-612, gnl|bosTau2|chr19 (13714384-13713788)
               

               
               6-612, gnl|Hg17|chr17 (24109144-24108538)
               

               
               6-612, gnl|Mm7|chr11 (78237134-78237628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-612, gnl|bosTau2|chr19 (13714384-13713788)
               

               
               6-612, gnl|Hg17|chr17 (24109144-24108538)
               

               
               6-612, gnl|Mm7|chr11 (78237134-78237628)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               ldo (0.0970026)

	6-612, gnl\|bosTau2\|chr19 (13714384-13713788)
	6-612, gnl\|Hg17\|chr17 (24109144-24108538)
	6-612, gnl\|Mm7\|chr11 (78237134-78237628)