Non-Coding RNA Search

Ss1.1-rmed23c_c3.5

Sequence:


               
               ACCCCAACCTTGATGAGCCCCTGGCCAGCCACGTCTTCCGGCAGCTGGTGTCGGCAGTGG
GGTACCTGCACGCCAAGAGCATCGTCCATCGGGACATCAAGGACGAGAACGTGGTCATCG
CCGAGGACTTCTCCGTGAAGCTCATCGACTTCGGCTCGGCGGCCTACGTGGAGAGCGGCA
GGCTCTTCTACACCTTCTGCGGAACCATTGAGTACTGCGCCCCCGAGGTTCTCATGGGCA
ATCCATACCGGGGCCCGGAGCTGGAGATGTGGTCGCTGGGAGTGACGCTGTACACACTGA
TCTTTGAGGAGAACCCCTTCTGCGAGCTGGAGGAGACCGTGGAGGCCGTGATCAGCCCCC
CGCACCCGGTGTCGGATGATCTCATGAACCTCATTTCCGGGCTGCTACAGCCTATCCCCG
AGCAGCGCACCACCTTGGAGAAGCTGGCGGCTGACCCCTGGGTGACGCAGCCCGTGAACC
TGGCTGACTACACCTGGGAGGAGGTGTGTCGAGTGAACAAGCCAGAGAGCAGCATTTTGT
CCACCGCCAGTCTGGAGACAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCAACCTTGATGAGCCCCTGGCCAGCCACGTCTTCCGGCAGCTGGTGTCGGCAGTGG
GGTACCTGCACGCCAAGAGCATCGTCCATCGGGACATCAAGGACGAGAACGTGGTCATCG
CCGAGGACTTCTCCGTGAAGCTCATCGACTTCGGCTCGGCGGCCTACGTGGAGAGCGGCA
GGCTCTTCTACACCTTCTGCGGAACCATTGAGTACTGCGCCCCCGAGGTTCTCATGGGCA
ATCCATACCGGGGCCCGGAGCTGGAGATGTGGTCGCTGGGAGTGACGCTGTACACACTGA
TCTTTGAGGAGAACCCCTTCTGCGAGCTGGAGGAGACCGTGGAGGCCGTGATCAGCCCCC
CGCACCCGGTGTCGGATGATCTCATGAACCTCATTTCCGGGCTGCTACAGCCTATCCCCG
AGCAGCGCACCACCTTGGAGAAGCTGGCGGCTGACCCCTGGGTGACGCAGCCCGTGAACC
TGGCTGACTACACCTGGGAGGAGGTGTGTCGAGTGAACAAGCCAGAGAGCAGCATTTTGT
CCACCGCCAGTCTGGAGACAGAGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               42-258, gnl|bosTau2|chr3 (82866229-82866444)
               

               
               42-258, gnl|Hg17|chr2 (241771847-241771631)
               

               
               42-258, gnl|Mm7|chr1 (93222292-93222081)
               


               
               378-533, gnl|bosTau2|chr3 (82870562-82870718)
               

               
               378-533, gnl|Hg17|chr2 (241766905-241766743)
               

               
               378-533, gnl|Mm7|chr1 (93218724-93218568)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-258, gnl|bosTau2|chr3 (82866229-82866444)
               

               
               42-258, gnl|Hg17|chr2 (241771847-241771631)
               

               
               42-258, gnl|Mm7|chr1 (93222292-93222081)
               


               
               378-533, gnl|bosTau2|chr3 (82870562-82870718)
               

               
               378-533, gnl|Hg17|chr2 (241766905-241766743)
               

               
               378-533, gnl|Mm7|chr1 (93218724-93218568)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               csp (0.161186)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               med (0.116252)

	42-258, gnl\|bosTau2\|chr3 (82866229-82866444)
	42-258, gnl\|Hg17\|chr2 (241771847-241771631)
	42-258, gnl\|Mm7\|chr1 (93222292-93222081)

	378-533, gnl\|bosTau2\|chr3 (82870562-82870718)
	378-533, gnl\|Hg17\|chr2 (241766905-241766743)
	378-533, gnl\|Mm7\|chr1 (93218724-93218568)