Ss1.1-rmed23c_f16.5
|
TGAATTCCCAAACCTGAAAGCCTTCTCAGCCGCTTTTGAGGGCCTGGAAGGATCTCAGCC
TACATGAGGTCCAGCCGCTTCCTGCCACACCCCGTGTATACAAAGATGGCCATGTGGGGC
AACAAGTAGTGCCCTGGAAGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGGACAGCTGG
CCCTCCCTGCAGCCCACGACCAGACGTCTTGCTTGTCCTCCTTGTTCCCATCAGGCCTCA
CGTGGCCCCTAAGCCTTTCCCAGGCCGCATTCACCAGGATCTTGAGCGCTCTGCAGCCTC
ATGCCCTTCTGCCGTGAAGTCAGCGGCTGAAGGTATCCTTTCTGCTCTGAGGCCAACCAG
ACCCGCCTTCCTTTCTGTGCTTGCTCCTGCTGTGAGCAGCCTGACCTGGAGAGCTCAGGC
CTGACGTGTGGAGCCTGGCCCTTGCCTGTGGGGCTCAGTCCTGAGCTGCCCAGCCCTGCC
CTGAAGACCAGCCCTGACCCGGCGTGTAGGCCCTGCTCCCCCAGCGTGGTCCCCACCCAG
CCCTGCCTGATCAGCAGTAAAGCCTCACTCACACCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAATTCCCAAACCTGAAAGCCTTCTCAGCCGCTTTTGAGGGCCTGGAAGGATCTCAGCC
TACATGAGGTCCAGCCGCTTCCTGCCACACCCCGTGTATACAAAGATGGCCATGTGGGGC
AACAAGTAGTGCCCTGGAAGCAGGAGATGGAGTGAGGAGCAGGCCCTGGAGGACAGCTGG
CCCTCCCTGCAGCCCACGACCAGACGTCTTGCTTGTCCTCCTTGTTCCCATCAGGCCTCA
CGTGGCCCCTAAGCCTTTCCCAGGCCGCATTCACCAGGATCTTGAGCGCTCTGCAGCCTC
ATGCCCTTCTGCCGTGAAGTCAGCGGCTGAAGGTATCCTTTCTGCTCTGAGGCCAACCAG
ACCCGCCTTCCTTTCTGTGCTTGCTCCTGCTGTGAGCAGCCTGACCTGGAGAGCTCAGGC
CTGACGTGTGGAGCCTGGCCCTTGCCTGTGGGGCTCAGTCCTGAGCTGCCCAGCCCTGCC
CTGAAGACCAGCCCTGACCCGGCGTGTAGGCCCTGCTCCCCCAGCGTGGTCCCCACCCAG
CCCTGCCTGATCAGCAGTAAAGCCTCACTCACACCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
39-576, gnl|bosTau2|chr3 (25773967-25773417) |
|
39-576, gnl|canFam2|chr6 (45262450-45262798) |
|
39-576, gnl|echTel1|scaffold_285412 (49687-49445) |
|
39-576, gnl|Hg17|chr1 (109915827-109916367) |
|
39-576, gnl|hg17|chr3 (12273875-12274196) |
|
39-576, gnl|loxAfr1|scaffold_51523 (1141-1472) |
|
39-576, gnl|mm7|chr5 (115862084-115862402) |
|
39-576, gnl|oryCun1|scaffold_147771 (5786-6115) |
|
39-576, gnl|panTro1|chr2 (12725090-12725412) |
|
39-576, gnl|rheMac2|chr2 (48806306-48805986) |
|
39-576, gnl|rn3|chr2 (203538200-203538482) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
39-576, gnl|bosTau2|chr3 (25773967-25773417) |
|
39-576, gnl|canFam2|chr6 (45262450-45262798) |
|
39-576, gnl|echTel1|scaffold_285412 (49687-49445) |
|
39-576, gnl|Hg17|chr1 (109915827-109916367) |
|
39-576, gnl|hg17|chr3 (12273875-12274196) |
|
39-576, gnl|loxAfr1|scaffold_51523 (1141-1472) |
|
39-576, gnl|mm7|chr5 (115862084-115862402) |
|
39-576, gnl|oryCun1|scaffold_147771 (5786-6115) |
|
39-576, gnl|panTro1|chr2 (12725090-12725412) |
|
39-576, gnl|rheMac2|chr2 (48806306-48805986) |
|
39-576, gnl|rn3|chr2 (203538200-203538482) |
|
mcp (0.341297) |
|
csp (0.322373) |
|
cli (0.305623) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
fli (0.202881) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
nje (0.16592) |
|
cag (0.151194) |
|
med (0.116252) |
|
jca (0.11396) |
|
mcp (0.341297) |
|
csp (0.322373) |
|
cli (0.305623) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
nmm (0.265604) |
|
fli (0.202881) |
|
jej (0.197844) |
|
nlu (0.191681) |
|
nje (0.16592) |
|
cag (0.151194) |
|
med (0.116252) |
|
jca (0.11396) |
