Non-Coding RNA Search

Ss1.1-rmed23c_k10.5S

Sequence:


               
               TCATCAAAACGAGCAGTTAGAGAGCTGCAATGGTGAAAAGCCTCCTTGTTTGGAGATTCT
AACAAATGGGTTTGCAGTATTGGAAACTGTAAATCCTCAGGGAACAGATGATCTGGACAA
TGTAGCTGATTCAAAAGGACGAAAGCCTCTTAGCACTCATAGTACTGAGTTTAATTTAGA
CTCTGCACCTAGTCCTGCTGAGGAATTTGCAGATTTTGCCACATTTTCCAAAAAAGAAAG
GATACAACTAGAAGAAATAGGACATGCAGTTTTAAATGATAGAGAAGCACTAACCATTCA
GGAAAACCATGAAATTAATAGAGTCAGTGAACCGAATTCTGTAAAAGAAGTGTGTTTGGA
TGGAAGCTTTGGCAATGAAGGAGATACTGCTAGAGAGGATGAGGTTTGTGTTTCAGAAAT
AAGCATAGTGAGTAACAGAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATCAAAACGAGCAGTTAGAGAGCTGCAATGGTGAAAAGCCTCCTTGTTTGGAGATTCT
AACAAATGGGTTTGCAGTATTGGAAACTGTAAATCCTCAGGGAACAGATGATCTGGACAA
TGTAGCTGATTCAAAAGGACGAAAGCCTCTTAGCACTCATAGTACTGAGTTTAATTTAGA
CTCTGCACCTAGTCCTGCTGAGGAATTTGCAGATTTTGCCACATTTTCCAAAAAAGAAAG
GATACAACTAGAAGAAATAGGACATGCAGTTTTAAATGATAGAGAAGCACTAACCATTCA
GGAAAACCATGAAATTAATAGAGTCAGTGAACCGAATTCTGTAAAAGAAGTGTGTTTGGA
TGGAAGCTTTGGCAATGAAGGAGATACTGCTAGAGAGGATGAGGTTTGTGTTTCAGAAAT
AAGCATAGTGAGTAACAGAGGTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-239, - strand, RNAz p=0.991116
               

               
               7-155, - strand, RNAz p=0.917105

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.991116
               

               
               7-155, - strand, RNAz p=0.917105

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-444, gnl|bosTau2|chr11 (45425163-45425600)
               

               
               1-444, gnl|canFam2|chr10 (67282242-67282841)
               

               
               1-444, gnl|dasNov1|scaffold_76542 (936-336)
               

               
               1-444, gnl|echTel1|scaffold_295814 (67684-67094)
               

               
               1-444, gnl|galGal2|chr3 (7427172-7426654)
               

               
               1-444, gnl|hg17|chr2 (64690673-64691272)
               

               
               1-444, gnl|Hg17|chr2 (64690745-64691188)
               

               
               1-444, gnl|loxAfr1|scaffold_5942 (76056-75454)
               

               
               1-444, gnl|mm7|chr11 (20679205-20678606)
               

               
               1-444, gnl|Mm7|chr11 (20679131-20678688)
               

               
               1-444, gnl|monDom2|scaffold_1 (30012965-30013534)
               

               
               1-444, gnl|oryCun1|scaffold_199645 (5-598)
               

               
               1-444, gnl|panTro1|chr12 (66922858-66923457)
               

               
               1-444, gnl|rheMac2|chr13 (64760708-64761307)
               

               
               1-444, gnl|rn3|chr14 (101540102-101539500)
               

               
               1-444, gnl|xenTro1|scaffold_321 (596827-596267)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr11 (45425163-45425600)
               

               
               1-444, gnl|canFam2|chr10 (67282242-67282841)
               

               
               1-444, gnl|dasNov1|scaffold_76542 (936-336)
               

               
               1-444, gnl|echTel1|scaffold_295814 (67684-67094)
               

               
               1-444, gnl|galGal2|chr3 (7427172-7426654)
               

               
               1-444, gnl|hg17|chr2 (64690673-64691272)
               

               
               1-444, gnl|Hg17|chr2 (64690745-64691188)
               

               
               1-444, gnl|loxAfr1|scaffold_5942 (76056-75454)
               

               
               1-444, gnl|mm7|chr11 (20679205-20678606)
               

               
               1-444, gnl|Mm7|chr11 (20679131-20678688)
               

               
               1-444, gnl|monDom2|scaffold_1 (30012965-30013534)
               

               
               1-444, gnl|oryCun1|scaffold_199645 (5-598)
               

               
               1-444, gnl|panTro1|chr12 (66922858-66923457)
               

               
               1-444, gnl|rheMac2|chr13 (64760708-64761307)
               

               
               1-444, gnl|rn3|chr14 (101540102-101539500)
               

               
               1-444, gnl|xenTro1|scaffold_321 (596827-596267)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               ecc (0.115035)

	1-239, - strand, RNAz p=0.991116
	7-155, - strand, RNAz p=0.917105

	1-444, gnl\|bosTau2\|chr11 (45425163-45425600)
	1-444, gnl\|canFam2\|chr10 (67282242-67282841)
	1-444, gnl\|dasNov1\|scaffold_76542 (936-336)
	1-444, gnl\|echTel1\|scaffold_295814 (67684-67094)
	1-444, gnl\|galGal2\|chr3 (7427172-7426654)
	1-444, gnl\|hg17\|chr2 (64690673-64691272)
	1-444, gnl\|Hg17\|chr2 (64690745-64691188)
	1-444, gnl\|loxAfr1\|scaffold_5942 (76056-75454)
	1-444, gnl\|mm7\|chr11 (20679205-20678606)
	1-444, gnl\|Mm7\|chr11 (20679131-20678688)
	1-444, gnl\|monDom2\|scaffold_1 (30012965-30013534)
	1-444, gnl\|oryCun1\|scaffold_199645 (5-598)
	1-444, gnl\|panTro1\|chr12 (66922858-66923457)
	1-444, gnl\|rheMac2\|chr13 (64760708-64761307)
	1-444, gnl\|rn3\|chr14 (101540102-101539500)
	1-444, gnl\|xenTro1\|scaffold_321 (596827-596267)