Non-Coding RNA Search

Ss1.1-rmed23c_k21.5

Sequence:


               
               CTACCATCTGTCTTGCTAGCCAAATGCCCCTGATCCCCTTTCTGCTTTAGTCCATAGATG
GGCTGGACTGAGCCAAACTGCTTTCCCTACCCCACCCCAGCCCCATCACTGCCACGCCCT
CCCCATACCAGATACTTCATGGACCAAGAAAGAGCTGGGTTACCCAACAACATGTGAGCA
GGTCACAACCACAAAGCTCAAGACGACAGTGCTTCTCCCTCAAGGGCCTGGAGAAGCCCT
GTTTACAGAAAATCAGCTGCTGTCTGTAAGATGGACCAGGGGAAGCCTTTTGCCACATTC
TCAGGACCTTACAAGAAGAGCAGTGAATGGAACAGGTTAGGTTTAGACCTATCACAAGGG
TAACAGGAATAACCTGACACTACCTTACAGACAAGTGGGGGCGGGGGCGGGGAATGTTCC
AGTTTGAATCACTTGGAAATGTTCCTGAGAAACTCAACCGCCTAAGAAGCCCTGATAACA
AATGCCCCAGTCACTAGAGGCTGCAACCAACAGTTCAACTAAGTCAGGGCTTGAAATCCA
GCATGCACCCCTACCCACTTTTGAGAGCCTTTCTCATGACTGATTTCCCGTTCATTCACT
GTCTAGCCAGCTCTTAAACAGTTGTGAGAGGGGCAAACCACACCTCACACAGAGCCAGTG
CCTATCTTCTAGCATGAAACTAGGTTCCCTGTGAGGCTGCAGGAAGGAAGACCGTGATAA
CCAAAGCAAGAAGCCCAAAAAAATCTCCTATAGTGGACAGTGGGTTTTCACCACAGCCTA
CTTTAACCCATTTCTGAGCCAAGCTTCAACCCTGAGCCTTACACAATATTTTTTTTTTTT
TTGGCCACTCACGGCAGGTAGAAGTTTCTAGACCAGGGACTGAACCTGCACCACAGCAGT
GACCCAAGCCACTGCAGTGACAAGGCCAGGTCCTTAACCCACTGAGCCACAAGACAACTC
CAAACAAATCTTTAAAATTTAACTTAGTTGGAGTTTTGTTTCGACTGTACATAGCCTGAA
CAGCAAAGAAAAAGGGCTATCCCCATACCCCACACACCCCTCAACAAAAGCCTTTAGTTC
TTACTTTAGCCACTGGCTTCTCTGAATCCAAAGAGCCTATGTTCTAGTTTAGCGCCACAA
GAATTCTTGGGAGAAAAAAGGACCACTGTAGTATTCAAAATATTTTTGTATTGTTAATGC
GTATCATAGAAGAACTTTTCTGACATGAGAATAAAGATACTTTTTACTGGGTTTCTTTTT
CGAAGCTTGACCCTGAGGATTAAGCTGTTTCAATAACAAGAGGATGACACGTTCCTCTGC
TTCTCCACAGCCACCAAACTTGAGCTTTACTCTCTTAGTACGCATGTTCTCGAGAATCAA
CCCACACAAGCCAGGGATTACTCCCGTCCCCTCTCCTTAAGGGCCATGGGCACTGCTCCA
ACCCAGACAACAGGGCTCATCGAGGTGTAAACTCCCGTTCCACGCCCTGATCTTAACCCC
CTAATCCTCTGGCCTCACACCTGATGCAGGCACAGGCCCGCCTGCCTCCACCGCTCATTT
GAGAATGGGGTGGAAATTGGTACCTACGGTCCTTAAGCCCCAACCAGAGAGAGAAGCACA
TCACCACCAGGTTCCAGTTTCCTCTGAAGGCAGAGAGAAAAGTAAACACAAGTATACATC
CTATTTTGAGGAAAACAAAACACAAGCATCTTTTATAACCTGGTATCATAAAATCTAAAA
GGAAGGTATTTTAAATAGCACCCTTTCCTCCCAAAGACTGTTTAAGGTACATGAAGCATT
TCTTAAAGTATTTCTGTTAACTTCTCGAGCCCCGTCATGAATGTAAAAGGCGTCATAAAG
CCAGCGCAAATGTCAGTCAAGCAGCAGATATAAATGTTGGGCAAGAAGTTATCACAACCA
GGCACGGGGCCACTGTCATGTATTGTAATTTCCATTTCACTGAGTTACACTTTTTGAATT
TTATGTTTAAAAATATTTATAAATAAAGTCATCTTCCAGAGTAGTGTCTATTTAAAGTAG
GCCACTGGAAGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCATCTGTCTTGCTAGCCAAATGCCCCTGATCCCCTTTCTGCTTTAGTCCATAGATG
GGCTGGACTGAGCCAAACTGCTTTCCCTACCCCACCCCAGCCCCATCACTGCCACGCCCT
CCCCATACCAGATACTTCATGGACCAAGAAAGAGCTGGGTTACCCAACAACATGTGAGCA
GGTCACAACCACAAAGCTCAAGACGACAGTGCTTCTCCCTCAAGGGCCTGGAGAAGCCCT
GTTTACAGAAAATCAGCTGCTGTCTGTAAGATGGACCAGGGGAAGCCTTTTGCCACATTC
TCAGGACCTTACAAGAAGAGCAGTGAATGGAACAGGTTAGGTTTAGACCTATCACAAGGG
TAACAGGAATAACCTGACACTACCTTACAGACAAGTGGGGGCGGGGGCGGGGAATGTTCC
AGTTTGAATCACTTGGAAATGTTCCTGAGAAACTCAACCGCCTAAGAAGCCCTGATAACA
AATGCCCCAGTCACTAGAGGCTGCAACCAACAGTTCAACTAAGTCAGGGCTTGAAATCCA
GCATGCACCCCTACCCACTTTTGAGAGCCTTTCTCATGACTGATTTCCCGTTCATTCACT
GTCTAGCCAGCTCTTAAACAGTTGTGAGAGGGGCAAACCACACCTCACACAGAGCCAGTG
CCTATCTTCTAGCATGAAACTAGGTTCCCTGTGAGGCTGCAGGAAGGAAGACCGTGATAA
CCAAAGCAAGAAGCCCAAAAAAATCTCCTATAGTGGACAGTGGGTTTTCACCACAGCCTA
CTTTAACCCATTTCTGAGCCAAGCTTCAACCCTGAGCCTTACACAATATTTTTTTTTTTT
TTGGCCACTCACGGCAGGTAGAAGTTTCTAGACCAGGGACTGAACCTGCACCACAGCAGT
GACCCAAGCCACTGCAGTGACAAGGCCAGGTCCTTAACCCACTGAGCCACAAGACAACTC
CAAACAAATCTTTAAAATTTAACTTAGTTGGAGTTTTGTTTCGACTGTACATAGCCTGAA
CAGCAAAGAAAAAGGGCTATCCCCATACCCCACACACCCCTCAACAAAAGCCTTTAGTTC
TTACTTTAGCCACTGGCTTCTCTGAATCCAAAGAGCCTATGTTCTAGTTTAGCGCCACAA
GAATTCTTGGGAGAAAAAAGGACCACTGTAGTATTCAAAATATTTTTGTATTGTTAATGC
GTATCATAGAAGAACTTTTCTGACATGAGAATAAAGATACTTTTTACTGGGTTTCTTTTT
CGAAGCTTGACCCTGAGGATTAAGCTGTTTCAATAACAAGAGGATGACACGTTCCTCTGC
TTCTCCACAGCCACCAAACTTGAGCTTTACTCTCTTAGTACGCATGTTCTCGAGAATCAA
CCCACACAAGCCAGGGATTACTCCCGTCCCCTCTCCTTAAGGGCCATGGGCACTGCTCCA
ACCCAGACAACAGGGCTCATCGAGGTGTAAACTCCCGTTCCACGCCCTGATCTTAACCCC
CTAATCCTCTGGCCTCACACCTGATGCAGGCACAGGCCCGCCTGCCTCCACCGCTCATTT
GAGAATGGGGTGGAAATTGGTACCTACGGTCCTTAAGCCCCAACCAGAGAGAGAAGCACA
TCACCACCAGGTTCCAGTTTCCTCTGAAGGCAGAGAGAAAAGTAAACACAAGTATACATC
CTATTTTGAGGAAAACAAAACACAAGCATCTTTTATAACCTGGTATCATAAAATCTAAAA
GGAAGGTATTTTAAATAGCACCCTTTCCTCCCAAAGACTGTTTAAGGTACATGAAGCATT
TCTTAAAGTATTTCTGTTAACTTCTCGAGCCCCGTCATGAATGTAAAAGGCGTCATAAAG
CCAGCGCAAATGTCAGTCAAGCAGCAGATATAAATGTTGGGCAAGAAGTTATCACAACCA
GGCACGGGGCCACTGTCATGTATTGTAATTTCCATTTCACTGAGTTACACTTTTTGAATT
TTATGTTTAAAAATATTTATAAATAAAGTCATCTTCCAGAGTAGTGTCTATTTAAAGTAG
GCCACTGGAAGTAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               152-258, - strand, RNAz p=0.999892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-258, - strand, RNAz p=0.999892

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               8-826, gnl|bosTau2|chr7 (30865774-30864960)
               

               
               8-826, gnl|Hg17|chr5 (133510378-133511227)
               

               
               8-826, gnl|Mm7|chr11 (52210184-52209460)
               


               
               1004-2052, gnl|bosTau2|chr7 (30864909-30863909)
               

               
               1004-2052, gnl|Hg17|chr5 (133511585-133513176)
               

               
               1004-2052, gnl|Mm7|chr11 (52209415-52208281)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-826, gnl|bosTau2|chr7 (30865774-30864960)
               

               
               8-826, gnl|Hg17|chr5 (133510378-133511227)
               

               
               8-826, gnl|Mm7|chr11 (52210184-52209460)
               


               
               1004-2052, gnl|bosTau2|chr7 (30864909-30863909)
               

               
               1004-2052, gnl|Hg17|chr5 (133511585-133513176)
               

               
               1004-2052, gnl|Mm7|chr11 (52209415-52208281)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               thg (1.77507)
               

               
               spl (1.00229)
               

               
               fty (0.879198)
               

               
               med (0.813764)
               

               
               cbl (0.688784)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.77507)
               

               
               spl (1.00229)
               

               
               fty (0.879198)
               

               
               med (0.813764)
               

               
               cbl (0.688784)
               

               
               cag (0.453583)
               

               
               cly (0.361925)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               cov (0.132153)

	8-826, gnl\|bosTau2\|chr7 (30865774-30864960)
	8-826, gnl\|Hg17\|chr5 (133510378-133511227)
	8-826, gnl\|Mm7\|chr11 (52210184-52209460)

	1004-2052, gnl\|bosTau2\|chr7 (30864909-30863909)
	1004-2052, gnl\|Hg17\|chr5 (133511585-133513176)
	1004-2052, gnl\|Mm7\|chr11 (52209415-52208281)

	thg (1.77507)
	spl (1.00229)
	fty (0.879198)
	med (0.813764)
	cbl (0.688784)
	cag (0.453583)
	cly (0.361925)
	sin (0.174948)
	pty (0.142714)
	cov (0.132153)