Non-Coding RNA Search

Ss1.1-rmed24c_c21.5

Sequence:


               
               GTTCTGAAGAGCCAGAAGGGCGTCGTGACCCCTCGGCCTCTCCACCTTCCCCCAAAGCAT
GGGCGATGCCACAGCCCCTTCGCCTCCTTCCAGAACCTGAAACCAAGCTCATGTTTTGGG
AGACATGGTCGCCACTCCTGTGGTACTGATGCTTGCTGGATTTAGGGAGGGCCTCTGCTC
CCATGCCTCTTCCCACAGCCTGGGGACCAGTTTTCGTCTTTCGCTGTTGGATGTTCCCAC
TGCATGCTGTGACCTCCCCTCCCCAACAAGAGACTCCATTGCATGTTCTAAGTGCGGGGT
GGGAAGATAGAGGCGGCGGGGCGTGCAGCGGATGAGGGGATGGGCAAAGCCCAACCCAGC
AGTTAGCAGCGTCTTGCAGGAGGCTCTGTATACCCACCCCCAGGGTACTAACCAGACCCC
CCCATTCCAGCCTGACGCCAGGCACCAGGCTGGACCCTCATCTGCGGTAAACCAGGCAGC
CAGCTTTGGGCTGAGCCACCAGCACCCGTGGTTGAGAGTGGCATTACGGAAGGTCCAGGG
AAGCTCTGAGCAGGTTTGGGACCAGGGCCCCTGGAGAGGTCAGAGGGGCCTCTGTGGGTG
CTGGGTGCTCCAGAGGTGCTGCTGGTGGAAGGATCGGTGCGGTCCCAGCAGGAAGGGAGG
GCCGGCGAGGCCCTTTTTGGCCCCTGGCTGGGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTGAAGAGCCAGAAGGGCGTCGTGACCCCTCGGCCTCTCCACCTTCCCCCAAAGCAT
GGGCGATGCCACAGCCCCTTCGCCTCCTTCCAGAACCTGAAACCAAGCTCATGTTTTGGG
AGACATGGTCGCCACTCCTGTGGTACTGATGCTTGCTGGATTTAGGGAGGGCCTCTGCTC
CCATGCCTCTTCCCACAGCCTGGGGACCAGTTTTCGTCTTTCGCTGTTGGATGTTCCCAC
TGCATGCTGTGACCTCCCCTCCCCAACAAGAGACTCCATTGCATGTTCTAAGTGCGGGGT
GGGAAGATAGAGGCGGCGGGGCGTGCAGCGGATGAGGGGATGGGCAAAGCCCAACCCAGC
AGTTAGCAGCGTCTTGCAGGAGGCTCTGTATACCCACCCCCAGGGTACTAACCAGACCCC
CCCATTCCAGCCTGACGCCAGGCACCAGGCTGGACCCTCATCTGCGGTAAACCAGGCAGC
CAGCTTTGGGCTGAGCCACCAGCACCCGTGGTTGAGAGTGGCATTACGGAAGGTCCAGGG
AAGCTCTGAGCAGGTTTGGGACCAGGGCCCCTGGAGAGGTCAGAGGGGCCTCTGTGGGTG
CTGGGTGCTCCAGAGGTGCTGCTGGTGGAAGGATCGGTGCGGTCCCAGCAGGAAGGGAGG
GCCGGCGAGGCCCTTTTTGGCCCCTGGCTGGGGGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               39-151, - strand, RNAz p=0.815531
               

               
               360-696, + strand, RNAz p=0.999097

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-151, - strand, RNAz p=0.815531
               

               
               360-696, + strand, RNAz p=0.999097

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_018929, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018929, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               39-696, gnl|bosTau2|chr7 (35336801-35337474)
               

               
               39-696, gnl|Hg17|chr5 (140871414-140872101)
               

               
               39-696, gnl|Mm7|chr18 (38216856-38217507)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-696, gnl|bosTau2|chr7 (35336801-35337474)
               

               
               39-696, gnl|Hg17|chr5 (140871414-140872101)
               

               
               39-696, gnl|Mm7|chr18 (38216856-38217507)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	39-151, - strand, RNAz p=0.815531
	360-696, + strand, RNAz p=0.999097

	39-696, gnl\|bosTau2\|chr7 (35336801-35337474)
	39-696, gnl\|Hg17\|chr5 (140871414-140872101)
	39-696, gnl\|Mm7\|chr18 (38216856-38217507)

	fcc (0.197785)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	cty (0.10408)