Non-Coding RNA Search

Ss1.1-rmed24c_f12.5

Sequence:


               
               GCACCAGCATCGCGGACCGCAAAGGCCGCCCGTCCCGTCAAACAAGTTTCTTCTTAGGCT
AAGAAACGCAGTATATACGAGTATCTCTATATATAGTACTAATGGATTTGGTGTGCTTCC
CCCTTAGCGTCCCCTGTCCCTCCGCTCCTCTTCCTTCAGCCTGGTCTCCCCCTCTCTCTG
CCCTCCACCCCCGTCTCTGCACTGAGATACATAAGAAACAAGGGTAGTTTACTGTCTGTT
TTGTTTTCTGGGTTTTCAGTGTCCTAGCGGAATGCAAGTAGGCAGCCAGCCCGTTTGTTC
CCTCTCCGCCCTGCCCCACCCAACCCCGCCCCCGTCACTGCGCTTCTGTTATACCATCTT
TGCCTGACTCTCTCCGGCTTCTCCATTGAATGGCTAATGTGTATGTGAAATAAAGAAATA
AAGAAAAACAAAAGCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCAGCATCGCGGACCGCAAAGGCCGCCCGTCCCGTCAAACAAGTTTCTTCTTAGGCT
AAGAAACGCAGTATATACGAGTATCTCTATATATAGTACTAATGGATTTGGTGTGCTTCC
CCCTTAGCGTCCCCTGTCCCTCCGCTCCTCTTCCTTCAGCCTGGTCTCCCCCTCTCTCTG
CCCTCCACCCCCGTCTCTGCACTGAGATACATAAGAAACAAGGGTAGTTTACTGTCTGTT
TTGTTTTCTGGGTTTTCAGTGTCCTAGCGGAATGCAAGTAGGCAGCCAGCCCGTTTGTTC
CCTCTCCGCCCTGCCCCACCCAACCCCGCCCCCGTCACTGCGCTTCTGTTATACCATCTT
TGCCTGACTCTCTCCGGCTTCTCCATTGAATGGCTAATGTGTATGTGAAATAAAGAAATA
AAGAAAAACAAAAGCAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-270, - strand, RNAz p=0.833075

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-270, - strand, RNAz p=0.833075

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               200-279, + strand, RNAmicro p=0.905028

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               200-279, + strand, RNAmicro p=0.905028

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-437, gnl|bosTau2|chr7 (9299745-9300185)
               

               
               1-437, gnl|Hg17|chr19 (13070179-13070610)
               

               
               1-437, gnl|Mm7|chr8 (83289966-83289527)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-437, gnl|bosTau2|chr7 (9299745-9300185)
               

               
               1-437, gnl|Hg17|chr19 (13070179-13070610)
               

               
               1-437, gnl|Mm7|chr8 (83289966-83289527)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-437, gnl\|bosTau2\|chr7 (9299745-9300185)
	1-437, gnl\|Hg17\|chr19 (13070179-13070610)
	1-437, gnl\|Mm7\|chr8 (83289966-83289527)

	cga (0.279096)
	fce (0.271592)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	fbs (0.175346)
	pty (0.142714)
	che (0.136314)
	ret (0.128733)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)