Ss1.1-rmed25c_d18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTGGTCCTGTCAGCGGAAGCCCGGACAGCATGAATGCCTCTCGCCTGAGTCACCCCAG CCAGCTGATGTCGCAGCCCTGCCCTGCCCCCGACAGTTTACCTGAGGCCATCAAGAAAAG TGAAGACCTCGTGGCTGAAGCACACAGCCTGTGCGCCCAGCTGGAAAATGTGCTGCAGGA CACGATGAAGGAGCAGGACCAGAGCTTAAAGTCCCTAGACTGGAGCTGGCTGCAGGTGGA GGAGGAGCAGAACAGCCTGGAGCAGGCCTCGTGACAGTGGATGGCCCTGACCTTGATGGG CGGCCTGGCTGTGGCATGTGACCGTCACCGTGGACCAAGAGTGCGGCCCTCCGTGGGCCC TGCCAGCAGTCTATCTGCACACGGGACATCGTCCATGACAGAGGCCAGCAGATGCAGACA CCAGGCGTGGGCGTCTAGGAAGACAGAGCCTTGGTGGCCACTCCTCTGCTCGGAGAAAAA ACTGCTCCAAGTGCGGTTGCCCCTCAGACCCCTGGGCGCATGTCTAATGTGACTTTCAGG ACAAAGTCTGAAGGGTACTTGGTGCCAGCCGTCCCCTTCTGACCCCTCCTGGTCTCCCGA GGCCCAGGTCCACCTGTCTTCACTGCTAGTGTCTCATCTGGATTCAGTGTCTCTGAAACA GACTCAGAAGTCGTGAATTCAGCCCGGCCCCGTCCTCCCTCTGCCTCTCCTTTCACTGCT GCTAATGTTTTCCTGCTCCCTGTGACCTTGGTGGCTGTCCCTTCCTTCAGCAGGGCTGCA AGTGAGTGCCATCCACCCCGTCTGTAGTCCTGCCAGCCACAGAGCCCCTCACTAGACCGG AAGGGAGGAGCAGCTCCCTCCCTGTGGGTTCCGGAGAGTCTCTGGCAGGAGTTGCCATGG AGAAGGAAGAAGGAAAAGATGGGTGTCTGTCACTCATTAGTCTGCTGACCTCAGCGCCAA GCCTCCCATGTGTGGCTTCGGCAGGGGGTGTGCCAGGAGGCGGTTCTCACCTCTTCTAGC AACTTCTATTACAAAGTCGATTTATTTAAAAAATAGATTCTCTATTTTGTGACACAACTC AAATCCCACACTCTATTTTTACAATACCTCCAGTTAGGACTTAACGAACTTACAATGCAT GTTCAGTGGAAAATTGTATGAAATTGCATAGTGTCTGAGCAGACTGACAGGGCACCAGCA CTGCAGCTTTGACATTTTGCAAGAACAGCAGGCAAGCAAAATGAGTTCAGACGATAACAA ATAGGCAGGTTGGGCTGGAGAAGAGAGTCGGACAGGAAGAGTTTCACCGAAGGCCTTCCA TGGAGGCAGTACCGTGGGTGTCCTGTCAAGTAAGTTTGAGACCCGCTTCACCCTTTAACT GCCTCTTAGAAATTTACCCCGTGCACTGATTCATTAAAGTATTTGAAAGTCCTGTGATAA TAAACTGGCTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTGGTCCTGTCAGCGGAAGCCCGGACAGCATGAATGCCTCTCGCCTGAGTCACCCCAG CCAGCTGATGTCGCAGCCCTGCCCTGCCCCCGACAGTTTACCTGAGGCCATCAAGAAAAG TGAAGACCTCGTGGCTGAAGCACACAGCCTGTGCGCCCAGCTGGAAAATGTGCTGCAGGA CACGATGAAGGAGCAGGACCAGAGCTTAAAGTCCCTAGACTGGAGCTGGCTGCAGGTGGA GGAGGAGCAGAACAGCCTGGAGCAGGCCTCGTGACAGTGGATGGCCCTGACCTTGATGGG CGGCCTGGCTGTGGCATGTGACCGTCACCGTGGACCAAGAGTGCGGCCCTCCGTGGGCCC TGCCAGCAGTCTATCTGCACACGGGACATCGTCCATGACAGAGGCCAGCAGATGCAGACA CCAGGCGTGGGCGTCTAGGAAGACAGAGCCTTGGTGGCCACTCCTCTGCTCGGAGAAAAA ACTGCTCCAAGTGCGGTTGCCCCTCAGACCCCTGGGCGCATGTCTAATGTGACTTTCAGG ACAAAGTCTGAAGGGTACTTGGTGCCAGCCGTCCCCTTCTGACCCCTCCTGGTCTCCCGA GGCCCAGGTCCACCTGTCTTCACTGCTAGTGTCTCATCTGGATTCAGTGTCTCTGAAACA GACTCAGAAGTCGTGAATTCAGCCCGGCCCCGTCCTCCCTCTGCCTCTCCTTTCACTGCT GCTAATGTTTTCCTGCTCCCTGTGACCTTGGTGGCTGTCCCTTCCTTCAGCAGGGCTGCA AGTGAGTGCCATCCACCCCGTCTGTAGTCCTGCCAGCCACAGAGCCCCTCACTAGACCGG AAGGGAGGAGCAGCTCCCTCCCTGTGGGTTCCGGAGAGTCTCTGGCAGGAGTTGCCATGG AGAAGGAAGAAGGAAAAGATGGGTGTCTGTCACTCATTAGTCTGCTGACCTCAGCGCCAA GCCTCCCATGTGTGGCTTCGGCAGGGGGTGTGCCAGGAGGCGGTTCTCACCTCTTCTAGC AACTTCTATTACAAAGTCGATTTATTTAAAAAATAGATTCTCTATTTTGTGACACAACTC AAATCCCACACTCTATTTTTACAATACCTCCAGTTAGGACTTAACGAACTTACAATGCAT GTTCAGTGGAAAATTGTATGAAATTGCATAGTGTCTGAGCAGACTGACAGGGCACCAGCA CTGCAGCTTTGACATTTTGCAAGAACAGCAGGCAAGCAAAATGAGTTCAGACGATAACAA ATAGGCAGGTTGGGCTGGAGAAGAGAGTCGGACAGGAAGAGTTTCACCGAAGGCCTTCCA TGGAGGCAGTACCGTGGGTGTCCTGTCAAGTAAGTTTGAGACCCGCTTCACCCTTTAACT GCCTCTTAGAAATTTACCCCGTGCACTGATTCATTAAAGTATTTGAAAGTCCTGTGATAA TAAACTGGCTTA |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chr27 (23650097-23650226) | |
| 1-130, gnl|Hg17|chr8 (42302653-42302782) | |
| 1-130, gnl|Mm7|chr8 (21449126-21448997) | |
| 205-309, gnl|bosTau2|chr27 (23653719-23653826) | |
| 205-309, gnl|canFam2|chr16 (26315284-26315206) | |
| 205-309, gnl|dasNov1|scaffold_24604 (6463-6544) | |
| 205-309, gnl|echTel1|scaffold_302439 (792-711) | |
| 205-309, gnl|galGal2|chrUn (911794-911871) | |
| 205-309, gnl|hg17|chr8 (42307568-42307649) | |
| 205-309, gnl|Hg17|chr8 (42307582-42307774) | |
| 205-309, gnl|loxAfr1|scaffold_48500 (34449-34530) | |
| 205-309, gnl|mm7|chr8 (21445799-21445718) | |
| 205-309, gnl|Mm7|chr8 (21445783-21445691) | |
| 205-309, gnl|oryCun1|scaffold_188018 (80679-80761) | |
| 205-309, gnl|panTro1|chr7 (43727587-43727668) | |
| 205-309, gnl|rheMac2|chr8 (42911283-42911364) | |
| 205-309, gnl|rn3|chr16 (73857540-73857621) | |
| 530-748, gnl|bosTau2|chr27 (23654089-23654298) | |
| 530-748, gnl|Hg17|chr8 (42308053-42308288) | |
| 530-748, gnl|Mm7|chr8 (21445453-21445253) | |
| 794-1452, gnl|bosTau2|chr27 (23654300-23654955) | |
| 794-1452, gnl|Hg17|chr8 (42308310-42308997) | |
| 794-1452, gnl|Mm7|chr8 (21445251-21444546) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chr27 (23650097-23650226) | |
| 1-130, gnl|Hg17|chr8 (42302653-42302782) | |
| 1-130, gnl|Mm7|chr8 (21449126-21448997) | |
| 205-309, gnl|bosTau2|chr27 (23653719-23653826) | |
| 205-309, gnl|canFam2|chr16 (26315284-26315206) | |
| 205-309, gnl|dasNov1|scaffold_24604 (6463-6544) | |
| 205-309, gnl|echTel1|scaffold_302439 (792-711) | |
| 205-309, gnl|galGal2|chrUn (911794-911871) | |
| 205-309, gnl|hg17|chr8 (42307568-42307649) | |
| 205-309, gnl|Hg17|chr8 (42307582-42307774) | |
| 205-309, gnl|loxAfr1|scaffold_48500 (34449-34530) | |
| 205-309, gnl|mm7|chr8 (21445799-21445718) | |
| 205-309, gnl|Mm7|chr8 (21445783-21445691) | |
| 205-309, gnl|oryCun1|scaffold_188018 (80679-80761) | |
| 205-309, gnl|panTro1|chr7 (43727587-43727668) | |
| 205-309, gnl|rheMac2|chr8 (42911283-42911364) | |
| 205-309, gnl|rn3|chr16 (73857540-73857621) | |
| 530-748, gnl|bosTau2|chr27 (23654089-23654298) | |
| 530-748, gnl|Hg17|chr8 (42308053-42308288) | |
| 530-748, gnl|Mm7|chr8 (21445453-21445253) | |
| 794-1452, gnl|bosTau2|chr27 (23654300-23654955) | |
| 794-1452, gnl|Hg17|chr8 (42308310-42308997) | |
| 794-1452, gnl|Mm7|chr8 (21445251-21444546) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| lnt (0.284616) | |
| cga (0.279096) | |
| med (0.232504) | |
| csp (0.161186) | |
| csk (0.140746) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.284616) | |
| cga (0.279096) | |
| med (0.232504) | |
| csp (0.161186) | |
| csk (0.140746) | |
| cty (0.10408) |