Non-Coding RNA Search

Ss1.1-rmed25c_e17.5

Sequence:


               
               GCCTTTGACCCTGAGGGCAAATGAGGCCCAGGTCAGGCCAGATGGGCCATGAGGACCTCC
GGCGGCAGAGCCCTGGCCCTGGGCAGCACTGGCCTCTCATCCTGCTGGGCCTGGCCATGG
GCGCTCATGGCCTGCTGCCCCCGACAACAGCACCACAGAGCAGAGCCCCAGGCACGGAAG
CACCAGCCAGAAGCAGCCCTTGGCGCCTGTGGGACCGCAGGTTCCTGCTCCGGCCCCCGC
CCCGGGGCACAGGCCCCAGGTGCTGGCCTGCCAGGTTTTGGTCCGAGCCTCAGCCACCGT
GGGTTGTTTTTGGCGGCGGGACCCGGCTCACCGTCCTAGGTCAGCCCAAGGCCGCCCCCA
CAGTCACGCTCTTCCCGCCCTCCCCTGAGGAGCTCAGCACCAACAAGGCCACCCTGGTGT
GTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACCA
CCATCACCCAGGGCGTGGATACCTCCCAGCCCTCGAAACAGAGCAACAACAAGTACGCGG
CCAGCAGCTACCTGGCCCTGTCCGCCAGTGACTGGAAATCTTCCAGCGGCTTCACCTGCC
AGGTCACCCACCAGGGGAACACAGTGGAGAAGACAGTGATGCCCTCCGAGTGCGCCTAGG
TCCCTGGGCCCCCACCCTCAGGGGCCTGGAGCCACAGGACTCCCGTGAGGGTCTCCCCCT
CAACAACCCTGGTCCAGCCCTTCCTCCTGCACCTGTCAACTCCCAATAAACTGTCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTGACCCTGAGGGCAAATGAGGCCCAGGTCAGGCCAGATGGGCCATGAGGACCTCC
GGCGGCAGAGCCCTGGCCCTGGGCAGCACTGGCCTCTCATCCTGCTGGGCCTGGCCATGG
GCGCTCATGGCCTGCTGCCCCCGACAACAGCACCACAGAGCAGAGCCCCAGGCACGGAAG
CACCAGCCAGAAGCAGCCCTTGGCGCCTGTGGGACCGCAGGTTCCTGCTCCGGCCCCCGC
CCCGGGGCACAGGCCCCAGGTGCTGGCCTGCCAGGTTTTGGTCCGAGCCTCAGCCACCGT
GGGTTGTTTTTGGCGGCGGGACCCGGCTCACCGTCCTAGGTCAGCCCAAGGCCGCCCCCA
CAGTCACGCTCTTCCCGCCCTCCCCTGAGGAGCTCAGCACCAACAAGGCCACCCTGGTGT
GTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACCA
CCATCACCCAGGGCGTGGATACCTCCCAGCCCTCGAAACAGAGCAACAACAAGTACGCGG
CCAGCAGCTACCTGGCCCTGTCCGCCAGTGACTGGAAATCTTCCAGCGGCTTCACCTGCC
AGGTCACCCACCAGGGGAACACAGTGGAGAAGACAGTGATGCCCTCCGAGTGCGCCTAGG
TCCCTGGGCCCCCACCCTCAGGGGCCTGGAGCCACAGGACTCCCGTGAGGGTCTCCCCCT
CAACAACCCTGGTCCAGCCCTTCCTCCTGCACCTGTCAACTCCCAATAAACTGTCCTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               LAC_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               LAC_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-199, - strand, RNAz p=0.987504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.987504

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-289, gnl|bosTau2|chr17 (45640570-45640856)
               

               
               1-289, gnl|Hg17|chr22 (22246951-22246658)
               


               
               338-686, gnl|bosTau2|chr17 (41397344-41397692)
               

               
               338-686, gnl|Hg17|chr22 (21567708-21568117)
               

               
               338-686, gnl|Mm7|chr16_random (2584194-2584521)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-289, gnl|bosTau2|chr17 (45640570-45640856)
               

               
               1-289, gnl|Hg17|chr22 (22246951-22246658)
               


               
               338-686, gnl|bosTau2|chr17 (41397344-41397692)
               

               
               338-686, gnl|Hg17|chr22 (21567708-21568117)
               

               
               338-686, gnl|Mm7|chr16_random (2584194-2584521)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.527519)
               

               
               med (0.348756)
               

               
               nbm (0.198649)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.527519)
               

               
               med (0.348756)
               

               
               nbm (0.198649)

	1-289, gnl\|bosTau2\|chr17 (45640570-45640856)
	1-289, gnl\|Hg17\|chr22 (22246951-22246658)

	338-686, gnl\|bosTau2\|chr17 (41397344-41397692)
	338-686, gnl\|Hg17\|chr22 (21567708-21568117)
	338-686, gnl\|Mm7\|chr16_random (2584194-2584521)