Non-Coding RNA Search

Ss1.1-rmed25c_f8.5

Sequence:


               
               CAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTTAGC
CCTCTACGTATATGAGTATCTGCTCCATGTAGGAGCTCAGAAGTCAGCCCAAACATTTTT
ATCAGAGATAAGATGGGAAAAAAACATCACATTGGGGGAACCACCAGGATTCTTACATTC
TTGGTGGTGTGTCTTTTGGGATCTCTACTGTGCAGCTCCAGAAAGACGGGAAACATGTGA
ACATTCAAGTGAAGCAAAAGCCTTCCATGATTATAGTGCTGCAGCAGCTCCCAGTCCAGT
GCTAGGAAACATTCCCCCAGGAGATGGCATGCCAGTAGGTCCTGTACCACCAGGGTTCTT
TCAGCCTTTTATGTCACCTCGATATCCTGGAGGTCCAAGGCCCCCACTGAGGATACCTAA
CCAGGCACTTGGAGGTGTCCCAGGAAGTCAGCCATTACTTCCCAGTGGAATGGACCCAAC
TCGACAACAAGGACATCCAAATATGGGTGGGCCAATGCAGAGAATGACTCCTCCAAGAGG
AATGGTGCCCTTAGGACCACAGAACTATGGAGGTGCAATGAGACCCCCACTGAATGCTTT
AGGTGGCCCCGGAATGCCTGGAATGAACATGGGTCCAGCTGGTGGTAGACCTTGGCCAAA
TCCAACAAATGCCAATTCAATACCATACTCCTCAGCATCTCCTGGGAACTATGTAGGTCC
TCCAGGATGTGGATGGCCACCATGAACACCCATCATGCCTAGTCCAGCAGATTCAACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAAGTTAGC
CCTCTACGTATATGAGTATCTGCTCCATGTAGGAGCTCAGAAGTCAGCCCAAACATTTTT
ATCAGAGATAAGATGGGAAAAAAACATCACATTGGGGGAACCACCAGGATTCTTACATTC
TTGGTGGTGTGTCTTTTGGGATCTCTACTGTGCAGCTCCAGAAAGACGGGAAACATGTGA
ACATTCAAGTGAAGCAAAAGCCTTCCATGATTATAGTGCTGCAGCAGCTCCCAGTCCAGT
GCTAGGAAACATTCCCCCAGGAGATGGCATGCCAGTAGGTCCTGTACCACCAGGGTTCTT
TCAGCCTTTTATGTCACCTCGATATCCTGGAGGTCCAAGGCCCCCACTGAGGATACCTAA
CCAGGCACTTGGAGGTGTCCCAGGAAGTCAGCCATTACTTCCCAGTGGAATGGACCCAAC
TCGACAACAAGGACATCCAAATATGGGTGGGCCAATGCAGAGAATGACTCCTCCAAGAGG
AATGGTGCCCTTAGGACCACAGAACTATGGAGGTGCAATGAGACCCCCACTGAATGCTTT
AGGTGGCCCCGGAATGCCTGGAATGAACATGGGTCCAGCTGGTGGTAGACCTTGGCCAAA
TCCAACAAATGCCAATTCAATACCATACTCCTCAGCATCTCCTGGGAACTATGTAGGTCC
TCCAGGATGTGGATGGCCACCATGAACACCCATCATGCCTAGTCCAGCAGATTCAACCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57084759|ref|XP_536304.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57084759|ref|XP_536304.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               79-198, - strand, RNAz p=0.53305
               

               
               399-518, - strand, RNAz p=0.907362
               

               
               631-750, - strand, RNAz p=0.582816

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-198, - strand, RNAz p=0.53305
               

               
               399-518, - strand, RNAz p=0.907362
               

               
               631-750, - strand, RNAz p=0.582816

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-544, gnl|bosTau2|chr3 (16155102-16154562)
               

               
               1-544, gnl|Hg17|chr6 (83031402-83030895)
               

               
               1-544, gnl|Mm7|chr4 (53676123-53676702)
               


               
               592-780, gnl|bosTau2|chr3 (16154566-16154378)
               

               
               592-780, gnl|Hg17|chr6 (83030899-83030713)
               

               
               592-780, gnl|Mm7|chr4 (53676698-53676872)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-544, gnl|bosTau2|chr3 (16155102-16154562)
               

               
               1-544, gnl|Hg17|chr6 (83031402-83030895)
               

               
               1-544, gnl|Mm7|chr4 (53676123-53676702)
               


               
               592-780, gnl|bosTau2|chr3 (16154566-16154378)
               

               
               592-780, gnl|Hg17|chr6 (83030899-83030713)
               

               
               592-780, gnl|Mm7|chr4 (53676698-53676872)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               clu (0.478583)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	79-198, - strand, RNAz p=0.53305
	399-518, - strand, RNAz p=0.907362
	631-750, - strand, RNAz p=0.582816

	1-544, gnl\|bosTau2\|chr3 (16155102-16154562)
	1-544, gnl\|Hg17\|chr6 (83031402-83030895)
	1-544, gnl\|Mm7\|chr4 (53676123-53676702)

	592-780, gnl\|bosTau2\|chr3 (16154566-16154378)
	592-780, gnl\|Hg17\|chr6 (83030899-83030713)
	592-780, gnl\|Mm7\|chr4 (53676698-53676872)

	clu (0.478583)
	fty (0.17584)
	lun (0.150489)
	ssp (0.13552)
	pla (0.133672)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)