Non-Coding RNA Search

Ss1.1-rmed25c_n3.5

Sequence:


               
               TAGGCCACAGATGGTTCCCAGAGAAAAAACACCACCAAAATGTGAAATACAAGGAAACAG
CTTCAAACAGAATTCAAATTTACTTAATCAACAAAAAAACAACACAGCAGGGAAACGGTA
TAACTGTAGTATGTGTGAGAAAACCTTCATCAATACTTCATCTCTTCGTAAACATGAGAA
AAACCATAGTGGAGAGAAATTATTTAAATGTAAAGACTGTTCAAAAGCGTTTAACCAAAG
TTCAGCTCTTATTCAACATCAGATAACTCATACTGGAGAAAAACCCTATATATGTAAAGA
ATGTGGGAAAGCCTTCACTCTCAGTACATCCCTTTATAAGCACTTAAGAACACATACTGT
GGAAAAATCCTATAGATGTAAAGAATGTGGTAAATCCTTCAGCCGAAGGTCAGGCCTTTT
TATACATCAGAAAATCCATGCTGGAGAAAATCCCTATAAATATAACCCAGGTCGGAAGGC
ATCCAGTTGCAGCACATCCCTTCCTGGATGTCAGAGAATTCATTCCAGAAAGAAGTCCTA
TTTATGTAATGAATGTGGCAACACCTTTAAGTCTAGTTCATCTCTTCG------------
------------------------------------------------CTTCAGTCAGAG
TGCATCTCTCATCCAGCATGAAAGAATTCACACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGCCACAGATGGTTCCCAGAGAAAAAACACCACCAAAATGTGAAATACAAGGAAACAG
CTTCAAACAGAATTCAAATTTACTTAATCAACAAAAAAACAACACAGCAGGGAAACGGTA
TAACTGTAGTATGTGTGAGAAAACCTTCATCAATACTTCATCTCTTCGTAAACATGAGAA
AAACCATAGTGGAGAGAAATTATTTAAATGTAAAGACTGTTCAAAAGCGTTTAACCAAAG
TTCAGCTCTTATTCAACATCAGATAACTCATACTGGAGAAAAACCCTATATATGTAAAGA
ATGTGGGAAAGCCTTCACTCTCAGTACATCCCTTTATAAGCACTTAAGAACACATACTGT
GGAAAAATCCTATAGATGTAAAGAATGTGGTAAATCCTTCAGCCGAAGGTCAGGCCTTTT
TATACATCAGAAAATCCATGCTGGAGAAAATCCCTATAAATATAACCCAGGTCGGAAGGC
ATCCAGTTGCAGCACATCCCTTCCTGGATGTCAGAGAATTCATTCCAGAAAGAAGTCCTA
TTTATGTAATGAATGTGGCAACACCTTTAAGTCTAGTTCATCTCTTCG------------
------------------------------------------------CTTCAGTCAGAG
TGCATCTCTCATCCAGCATGAAAGAATTCACACTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845577|ref|XP_602426.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845577|ref|XP_602426.1|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               8-624, gnl|bosTau2|chr18 (42744396-42743779)
               

               
               8-624, gnl|Mm7|chr7 (26857925-26858537)
               


               
               14-602, gnl|bosTau2|chr14 (25877065-25877653)
               

               
               14-602, gnl|Hg17|chr19 (49372825-49373413)
               


               
               15-600, gnl|bosTau2|chr10 (8996773-8996188)
               

               
               15-600, gnl|Hg17|chr19 (42818578-42817909)
               

               
               15-600, gnl|Mm7|chr2 (127310204-127309672)
               


               
               61-586, gnl|bosTau2|chr10 (8996559-8996034)
               

               
               61-586, gnl|Hg17|chr19 (42818364-42817755)
               

               
               61-586, gnl|Mm7|chr2 (127309990-127309549)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-624, gnl|bosTau2|chr18 (42744396-42743779)
               

               
               8-624, gnl|Mm7|chr7 (26857925-26858537)
               


               
               14-602, gnl|bosTau2|chr14 (25877065-25877653)
               

               
               14-602, gnl|Hg17|chr19 (49372825-49373413)
               


               
               15-600, gnl|bosTau2|chr10 (8996773-8996188)
               

               
               15-600, gnl|Hg17|chr19 (42818578-42817909)
               

               
               15-600, gnl|Mm7|chr2 (127310204-127309672)
               


               
               61-586, gnl|bosTau2|chr10 (8996559-8996034)
               

               
               61-586, gnl|Hg17|chr19 (42818364-42817755)
               

               
               61-586, gnl|Mm7|chr2 (127309990-127309549)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	8-624, gnl\|bosTau2\|chr18 (42744396-42743779)
	8-624, gnl\|Mm7\|chr7 (26857925-26858537)

	14-602, gnl\|bosTau2\|chr14 (25877065-25877653)
	14-602, gnl\|Hg17\|chr19 (49372825-49373413)

	15-600, gnl\|bosTau2\|chr10 (8996773-8996188)
	15-600, gnl\|Hg17\|chr19 (42818578-42817909)
	15-600, gnl\|Mm7\|chr2 (127310204-127309672)

	61-586, gnl\|bosTau2\|chr10 (8996559-8996034)
	61-586, gnl\|Hg17\|chr19 (42818364-42817755)
	61-586, gnl\|Mm7\|chr2 (127309990-127309549)