Ss1.1-rmed26c_c11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGGCGCAGTCGGTTAACATTACCGAGCTGAATCTGCCGCAGCTGGAAATGCTCAAGA ACCAGCTGGACCAGGAAGTGGAGTTCTTGTCCACGTCCATTGCCCAGCTCAAGGTGGTAC AGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGAACAAGAGCAACGAGGGGA AAGAATTACTCGTCCCACTGACGAGTTCTATGTACGTCCCTGGGAAGTTGCATGATGTGG AACATGTGCTCATCGATGTGGGAACTGGCTACTATGTAGAGAAGACAGCTGAAGATGCCA AGGACTTCTTCAAGAGGAAGATAGACTTCCTCACCAAGCAAATGGAGAAAATCCAGCCAG CTCTGCAGGAGAAGCATGCCATGAAACAGGCTGTCATGGAGATGATGAGCCAGAAGATTC AGCAGCTCACAGCCCTGGGAGCAGCTCAGGCAACTGCCAAAGCCTGAGAGCTTGTTTCAG AAATGGGATGGGGGTTCCTGCTTCAGGAGCCTTGGACTTTCTGAGCGTGGTTTCCTAGAA TGGGGGAGGAGGAGGGTCTTGTGTATTAACTAATAAATGTGCCAGCTGGGCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGGCGCAGTCGGTTAACATTACCGAGCTGAATCTGCCGCAGCTGGAAATGCTCAAGA ACCAGCTGGACCAGGAAGTGGAGTTCTTGTCCACGTCCATTGCCCAGCTCAAGGTGGTAC AGACCAAGTATGTGGAAGCCAAGGACTGTCTGAACGTGCTGAACAAGAGCAACGAGGGGA AAGAATTACTCGTCCCACTGACGAGTTCTATGTACGTCCCTGGGAAGTTGCATGATGTGG AACATGTGCTCATCGATGTGGGAACTGGCTACTATGTAGAGAAGACAGCTGAAGATGCCA AGGACTTCTTCAAGAGGAAGATAGACTTCCTCACCAAGCAAATGGAGAAAATCCAGCCAG CTCTGCAGGAGAAGCATGCCATGAAACAGGCTGTCATGGAGATGATGAGCCAGAAGATTC AGCAGCTCACAGCCCTGGGAGCAGCTCAGGCAACTGCCAAAGCCTGAGAGCTTGTTTCAG AAATGGGATGGGGGTTCCTGCTTCAGGAGCCTTGGACTTTCTGAGCGTGGTTTCCTAGAA TGGGGGAGGAGGAGGGTCTTGTGTATTAACTAATAAATGTGCCAGCTGGGCAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 73-540, - strand, RNAz p=0.996762 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-540, - strand, RNAz p=0.996762 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 73-178, gnl|bosTau2|chr5 (19140118-19140013) | |
| 73-178, gnl|canFam2|chr27 (4913217-4913090) | |
| 73-178, gnl|canFam2|chr3 (57887080-57887184) | |
| 73-178, gnl|canFam2|chr3 (57887080-57887184) | |
| 73-178, gnl|danRer3|chr6 (20872305-20872409) | |
| 73-178, gnl|danRer3|chr6 (20872419-20872304) | |
| 73-178, gnl|danRer3|chr6 (20872305-20872409) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130722-130618) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130617-130745) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130722-130618) | |
| 73-178, gnl|echTel1|scaffold_206726 (3650-3515) | |
| 73-178, gnl|echTel1|scaffold_301489 (7072-7176) | |
| 73-178, gnl|echTel1|scaffold_301489 (7072-7176) | |
| 73-178, gnl|fr1|chrUn (40747263-40747124) | |
| 73-178, gnl|galGal2|chrUn (85237624-85237501) | |
| 73-178, gnl|hg17|chr1 (219203430-219203534) | |
| 73-178, gnl|hg17|chr12 (51975880-51976017) | |
| 73-178, gnl|Hg17|chr12 (51975888-51975993) | |
| 73-178, gnl|hg17|chr1_random (2206708-2206812) | |
| 73-178, gnl|mm7|chr15 (102312580-102312716) | |
| 73-178, gnl|Mm7|chr15 (102312588-102312693) | |
| 73-178, gnl|mm7|chrX (140266447-140266551) | |
| 73-178, gnl|mm7|chrX (140266447-140266551) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4665-4561) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4551-4685) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4665-4561) | |
| 73-178, gnl|panTro1|chr10 (53213511-53213415) | |
| 73-178, gnl|panTro1|chr10 (53213403-53213540) | |
| 73-178, gnl|panTro1|chr10 (53213511-53213415) | |
| 73-178, gnl|rheMac2|chr1 (147629944-147629840) | |
| 73-178, gnl|rheMac2|chr1 (147629944-147629840) | |
| 73-178, gnl|rheMac2|chr11 (50362497-50362634) | |
| 73-178, gnl|rn3|chr7 (141152301-141152199) | |
| 73-178, gnl|rn3|chr7 (141152187-141152323) | |
| 73-178, gnl|rn3|chr7 (141152301-141152199) | |
| 73-178, gnl|tetNig1|chr11 (6657129-6657025) | |
| 73-178, gnl|tetNig1|chr11 (6657019-6657157) | |
| 73-178, gnl|tetNig1|chr11 (6657129-6657025) | |
| 73-178, gnl|xenTro1|scaffold_280 (1152374-1152244) | |
| 390-592, gnl|bosTau2|chr5 (19136844-19136641) | |
| 390-592, gnl|Hg17|chr12 (51979319-51979498) | |
| 390-592, gnl|Mm7|chr15 (102317429-102317645) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-178, gnl|bosTau2|chr5 (19140118-19140013) | |
| 73-178, gnl|canFam2|chr27 (4913217-4913090) | |
| 73-178, gnl|canFam2|chr3 (57887080-57887184) | |
| 73-178, gnl|canFam2|chr3 (57887080-57887184) | |
| 73-178, gnl|danRer3|chr6 (20872305-20872409) | |
| 73-178, gnl|danRer3|chr6 (20872419-20872304) | |
| 73-178, gnl|danRer3|chr6 (20872305-20872409) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130722-130618) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130617-130745) | |
| 73-178, gnl|dasNov1|scaffold_3391 (130722-130618) | |
| 73-178, gnl|echTel1|scaffold_206726 (3650-3515) | |
| 73-178, gnl|echTel1|scaffold_301489 (7072-7176) | |
| 73-178, gnl|echTel1|scaffold_301489 (7072-7176) | |
| 73-178, gnl|fr1|chrUn (40747263-40747124) | |
| 73-178, gnl|galGal2|chrUn (85237624-85237501) | |
| 73-178, gnl|hg17|chr1 (219203430-219203534) | |
| 73-178, gnl|hg17|chr12 (51975880-51976017) | |
| 73-178, gnl|Hg17|chr12 (51975888-51975993) | |
| 73-178, gnl|hg17|chr1_random (2206708-2206812) | |
| 73-178, gnl|mm7|chr15 (102312580-102312716) | |
| 73-178, gnl|Mm7|chr15 (102312588-102312693) | |
| 73-178, gnl|mm7|chrX (140266447-140266551) | |
| 73-178, gnl|mm7|chrX (140266447-140266551) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4665-4561) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4551-4685) | |
| 73-178, gnl|oryCun1|scaffold_206268 (4665-4561) | |
| 73-178, gnl|panTro1|chr10 (53213511-53213415) | |
| 73-178, gnl|panTro1|chr10 (53213403-53213540) | |
| 73-178, gnl|panTro1|chr10 (53213511-53213415) | |
| 73-178, gnl|rheMac2|chr1 (147629944-147629840) | |
| 73-178, gnl|rheMac2|chr1 (147629944-147629840) | |
| 73-178, gnl|rheMac2|chr11 (50362497-50362634) | |
| 73-178, gnl|rn3|chr7 (141152301-141152199) | |
| 73-178, gnl|rn3|chr7 (141152187-141152323) | |
| 73-178, gnl|rn3|chr7 (141152301-141152199) | |
| 73-178, gnl|tetNig1|chr11 (6657129-6657025) | |
| 73-178, gnl|tetNig1|chr11 (6657019-6657157) | |
| 73-178, gnl|tetNig1|chr11 (6657129-6657025) | |
| 73-178, gnl|xenTro1|scaffold_280 (1152374-1152244) | |
| 390-592, gnl|bosTau2|chr5 (19136844-19136641) | |
| 390-592, gnl|Hg17|chr12 (51979319-51979498) | |
| 390-592, gnl|Mm7|chr15 (102317429-102317645) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| che (1.09051) | |
| pro (1.02407) | |
| cmu (0.745573) | |
| pgl (0.592417) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| cst (0.420109) | |
| amn (0.417711) | |
| cov (0.396458) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| thg (0.253582) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eru (0.240096) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (1.09051) | |
| pro (1.02407) | |
| cmu (0.745573) | |
| pgl (0.592417) | |
| jca (0.45584) | |
| hyp (0.42851) | |
| cst (0.420109) | |
| amn (0.417711) | |
| cov (0.396458) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| spl (0.286369) | |
| nmm (0.265604) | |
| thg (0.253582) | |
| ese (0.253004) | |
| bla (0.248694) | |
| eru (0.240096) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ova (0.129132) | |
| sug (0.127291) | |
| cly (0.120642) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |