Non-Coding RNA Search

Ss1.1-rmed26c_d17.5

Sequence:


               
               TTCCGGCCCCAGGCGCTTCGGGATCGGCCGAACCGGGTGCAGACATGGCGAAGTCCAAGA
ACCACACCACGCATAATCAGTCCCGAAAATGGCACAGAAACGGCATCAAGAAACCCCGAT
CACAACGATATGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGCGGAATATGCGCTTTG
CCAAGAAGCACAACAAGAAGGGCCTAAAGAAGATGCAGGCCAACAACGCCAAGGCCATGA
GTGCACGTGCTGAAGCTATCAAGGCTCTTGTAAAACCCAAGGAGGTCAAGCCTAACATCC
CAAAGGGTGGCAGCCGCAAGCTCAGTCGACTTGCGTACATTGCTCACCCCAAACTTGGGA
AACGTGCTCGTGCTCGCATCGCCAAGGGCCTCAGGTTCTGCCGGCCAAAGTCCCAGGCCA
AGGCTCAGTCCAAGGCCAAGGCCACAGCTGGAGGTACAGCTGCAGCTCCAGTTCCTCCAG
CCTCGGCTCCCAAAGGTGCCCAGGCCCCCACAAAAGCTCCACAATAGAGGTGTTTATCTG
CCAATGTGAGGACAGAAGGACTGGTGTGATCCCTGGGCTGCTGTCTATACGGGGCTGGTG
TCCTGTGTTTGTACAAATAAACCTGCCTCAGGATCTGTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGCCCCAGGCGCTTCGGGATCGGCCGAACCGGGTGCAGACATGGCGAAGTCCAAGA
ACCACACCACGCATAATCAGTCCCGAAAATGGCACAGAAACGGCATCAAGAAACCCCGAT
CACAACGATATGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGCGGAATATGCGCTTTG
CCAAGAAGCACAACAAGAAGGGCCTAAAGAAGATGCAGGCCAACAACGCCAAGGCCATGA
GTGCACGTGCTGAAGCTATCAAGGCTCTTGTAAAACCCAAGGAGGTCAAGCCTAACATCC
CAAAGGGTGGCAGCCGCAAGCTCAGTCGACTTGCGTACATTGCTCACCCCAAACTTGGGA
AACGTGCTCGTGCTCGCATCGCCAAGGGCCTCAGGTTCTGCCGGCCAAAGTCCCAGGCCA
AGGCTCAGTCCAAGGCCAAGGCCACAGCTGGAGGTACAGCTGCAGCTCCAGTTCCTCCAG
CCTCGGCTCCCAAAGGTGCCCAGGCCCCCACAAAAGCTCCACAATAGAGGTGTTTATCTG
CCAATGTGAGGACAGAAGGACTGGTGTGATCCCTGGGCTGCTGTCTATACGGGGCTGGTG
TCCTGTGTTTGTACAAATAAACCTGCCTCAGGATCTGTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RL29_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RL29_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-160, - strand, RNAz p=0.57689
               

               
               401-511, - strand, RNAz p=0.999154

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.57689
               

               
               401-511, - strand, RNAz p=0.999154

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-655, gnl|bosTau2|chr16 (52722907-52722295)
               

               
               2-655, gnl|Hg17|chr3 (37033522-37032883)
               

               
               2-655, gnl|Mm7|chr1 (134407823-134408482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-655, gnl|bosTau2|chr16 (52722907-52722295)
               

               
               2-655, gnl|Hg17|chr3 (37033522-37032883)
               

               
               2-655, gnl|Mm7|chr1 (134407823-134408482)

Expressed library(ies): 62 entry(ies)

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Expressed library(ies): 62 entry(ies)

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               cag (4.83822)
               

               
               mcp (4.26621)
               

               
               eje (3.55802)
               

               
               cov (3.43597)
               

               
               elu (3.08285)
               

               
               csp (3.06254)
               

               
               ese (3.03605)
               

               
               eru (2.7611)
               

               
               lnt (2.70386)
               

               
               cly (2.65412)
               

               
               hlv (2.64587)
               

               
               nep (2.57495)
               

               
               eep (2.57384)
               

               
               nlu (2.49185)
               

               
               nje (2.4888)
               

               
               fty (2.46175)
               

               
               nco (2.26427)
               

               
               cga (2.23277)
               

               
               med (2.20879)
               

               
               nca (2.05311)
               

               
               jca (2.05128)
               

               
               pty (1.998)
               

               
               cli (1.98655)
               

               
               eye (1.87553)
               

               
               jej (1.78059)
               

               
               ecc (1.72553)
               

               
               nms (1.49701)
               

               
               nmm (1.46082)
               

               
               ill (1.40474)
               

               
               ebs (1.30131)
               

               
               mas (1.26183)
               

               
               ton (1.2285)
               

               
               fbs (1.22742)
               

               
               ece (1.14653)
               

               
               ute (1.06228)
               

               
               nbm (0.993246)
               

               
               cst (0.980255)
               

               
               col (0.975039)
               

               
               duo (0.864006)
               

               
               fli (0.811524)
               

               
               fhi (0.678311)
               

               
               eli (0.607257)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               pgl (0.473934)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               ste (0.405625)
               

               
               sag (0.36543)
               

               
               cki (0.330469)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (4.83822)
               

               
               mcp (4.26621)
               

               
               eje (3.55802)
               

               
               cov (3.43597)
               

               
               elu (3.08285)
               

               
               csp (3.06254)
               

               
               ese (3.03605)
               

               
               eru (2.7611)
               

               
               lnt (2.70386)
               

               
               cly (2.65412)
               

               
               hlv (2.64587)
               

               
               nep (2.57495)
               

               
               eep (2.57384)
               

               
               nlu (2.49185)
               

               
               nje (2.4888)
               

               
               fty (2.46175)
               

               
               nco (2.26427)
               

               
               cga (2.23277)
               

               
               med (2.20879)
               

               
               nca (2.05311)
               

               
               jca (2.05128)
               

               
               pty (1.998)
               

               
               cli (1.98655)
               

               
               eye (1.87553)
               

               
               jej (1.78059)
               

               
               ecc (1.72553)
               

               
               nms (1.49701)
               

               
               nmm (1.46082)
               

               
               ill (1.40474)
               

               
               ebs (1.30131)
               

               
               mas (1.26183)
               

               
               ton (1.2285)
               

               
               fbs (1.22742)
               

               
               ece (1.14653)
               

               
               ute (1.06228)
               

               
               nbm (0.993246)
               

               
               cst (0.980255)
               

               
               col (0.975039)
               

               
               duo (0.864006)
               

               
               fli (0.811524)
               

               
               fhi (0.678311)
               

               
               eli (0.607257)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               pgl (0.473934)
               

               
               amn (0.417711)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               ste (0.405625)
               

               
               sag (0.36543)
               

               
               cki (0.330469)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	41-160, - strand, RNAz p=0.57689
	401-511, - strand, RNAz p=0.999154

	2-655, gnl\|bosTau2\|chr16 (52722907-52722295)
	2-655, gnl\|Hg17\|chr3 (37033522-37032883)
	2-655, gnl\|Mm7\|chr1 (134407823-134408482)

	cag (4.83822)
	mcp (4.26621)
	eje (3.55802)
	cov (3.43597)
	elu (3.08285)
	csp (3.06254)
	ese (3.03605)
	eru (2.7611)
	lnt (2.70386)
	cly (2.65412)
	hlv (2.64587)
	nep (2.57495)
	eep (2.57384)
	nlu (2.49185)
	nje (2.4888)
	fty (2.46175)
	nco (2.26427)
	cga (2.23277)
	med (2.20879)
	nca (2.05311)
	jca (2.05128)
	pty (1.998)
	cli (1.98655)
	eye (1.87553)
	jej (1.78059)
	ecc (1.72553)
	nms (1.49701)
	nmm (1.46082)
	ill (1.40474)
	ebs (1.30131)
	mas (1.26183)
	ton (1.2285)
	fbs (1.22742)
	ece (1.14653)
	ute (1.06228)
	nbm (0.993246)
	cst (0.980255)
	col (0.975039)
	duo (0.864006)
	fli (0.811524)
	fhi (0.678311)
	eli (0.607257)
	hyp (0.571347)
	fce (0.543183)
	pgl (0.473934)
	amn (0.417711)
	hea (0.408998)
	che (0.408942)
	ste (0.405625)
	sag (0.36543)
	cki (0.330469)
	tes (0.207814)
	fcc (0.197785)
	cmu (0.186393)
	mgm (0.180343)
	sin (0.174948)
	cut (0.169924)
	csk (0.140746)
	thg (0.126791)
	clu (0.119646)
	spc (0.113366)
	ldo (0.0970026)