Non-Coding RNA Search

Ss1.1-rmed26c_d19.5

Sequence:


               
               GAAAGCTACACAAGTTGGGGAGAAACCCACCAAGGATGAATCTGCCAATCAGGAGGAGCC
AGAGCCCAGAGTCCCAGCCCACACCGAATCTGTGCGGAGACCCTGGGAGAAGAACAGCAC
AACCCTGCCAAGAATGAAGTCATCTTCTTCAGTGACTGCTTCCGAGGCCCACCCCGCTAC
GTCCAGTTCCAGTGATGAGTCTGACCTGGAGAGGGTGAAACAGGAGCTTCTGGAAGAGGT
GAGGAAGGAATTGCAGAAAGTGAAACAGGAAATAATTGAAGCCTTTGTCCAGGAGCTGAG
GAAACGGGGTTCCCCCTGACCACAGGGCCCCAGAAGATCCAATTTCTCCTTTCTGCACAC
CCCCTCGCCTGTCACCCTGCTTTCCCTGCCTCTACTTGACTTGGAATTGGCTGAAGACTA
CACAGGAATGCGTCTCCCCCACTCCCCATCTCACTTGGAAAATTCCAAGGGGGTGTGGCT
TCCCTGGCACCATGCCCACACCCATACTGGCTGCTGATTGGCTGGGGAGGCCCCCACCCT
TTGTTCCCTTTGGTCCTTCCCCTCAGCCATCCCCTTGGGGCTGGTTCCTCTGCTGGGGAT
GTACCAGTTAGCCCCACAGTAAAGGGGGGAGGAAGGAGGGAATTTCACATTCCCTTGTTC
TAGATTCACTTTAACGCTTAATGCCTTTGAAGTTTTGTTTTGTTTTTTTAAGAAAAAAAG
TATATATATATTTAGGTTGGGGGGAGGAAATTTTTTTTCTCTTTGGTTTTGATAAAATGG
GGTGTGGGGAGTTTTTAAATGCTGTGCCCCTGGCTTGTCCCATTTGGGACAGCTGTTTAA
GGGGGGGGTGTCCCATGAGGCTGGGGGCACCTCCCCCACTGCAGGGACCTCCCTTCCCTC
TGGCTCCTTCCCCTTTTCTATGAGGAATTAAGATGCTGTAACTTTTTGGAACCTCAGTTT
TTTGTTTTTTTTATTTGGGTAGGTTTGGGGGTCCAGGCCATTTTCACCCCTGGGGAAAAT
AAGATGAGGGAGAAAGGAAAGGGGGAGGAGAACTCCCCTCTCCCGCCTTCACCTTTAGCT
TCTTGAAAATGGGCCCCTGAGGAATAAATCTGCCAGTTTTTATACAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCTACACAAGTTGGGGAGAAACCCACCAAGGATGAATCTGCCAATCAGGAGGAGCC
AGAGCCCAGAGTCCCAGCCCACACCGAATCTGTGCGGAGACCCTGGGAGAAGAACAGCAC
AACCCTGCCAAGAATGAAGTCATCTTCTTCAGTGACTGCTTCCGAGGCCCACCCCGCTAC
GTCCAGTTCCAGTGATGAGTCTGACCTGGAGAGGGTGAAACAGGAGCTTCTGGAAGAGGT
GAGGAAGGAATTGCAGAAAGTGAAACAGGAAATAATTGAAGCCTTTGTCCAGGAGCTGAG
GAAACGGGGTTCCCCCTGACCACAGGGCCCCAGAAGATCCAATTTCTCCTTTCTGCACAC
CCCCTCGCCTGTCACCCTGCTTTCCCTGCCTCTACTTGACTTGGAATTGGCTGAAGACTA
CACAGGAATGCGTCTCCCCCACTCCCCATCTCACTTGGAAAATTCCAAGGGGGTGTGGCT
TCCCTGGCACCATGCCCACACCCATACTGGCTGCTGATTGGCTGGGGAGGCCCCCACCCT
TTGTTCCCTTTGGTCCTTCCCCTCAGCCATCCCCTTGGGGCTGGTTCCTCTGCTGGGGAT
GTACCAGTTAGCCCCACAGTAAAGGGGGGAGGAAGGAGGGAATTTCACATTCCCTTGTTC
TAGATTCACTTTAACGCTTAATGCCTTTGAAGTTTTGTTTTGTTTTTTTAAGAAAAAAAG
TATATATATATTTAGGTTGGGGGGAGGAAATTTTTTTTCTCTTTGGTTTTGATAAAATGG
GGTGTGGGGAGTTTTTAAATGCTGTGCCCCTGGCTTGTCCCATTTGGGACAGCTGTTTAA
GGGGGGGGTGTCCCATGAGGCTGGGGGCACCTCCCCCACTGCAGGGACCTCCCTTCCCTC
TGGCTCCTTCCCCTTTTCTATGAGGAATTAAGATGCTGTAACTTTTTGGAACCTCAGTTT
TTTGTTTTTTTTATTTGGGTAGGTTTGGGGGTCCAGGCCATTTTCACCCCTGGGGAAAAT
AAGATGAGGGAGAAAGGAAAGGGGGAGGAGAACTCCCCTCTCCCGCCTTCACCTTTAGCT
TCTTGAAAATGGGCCCCTGAGGAATAAATCTGCCAGTTTTTATACAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966288|pdb|1USE|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966288|pdb|1USE|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1021-1134, - strand, RNAz p=0.999734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1021-1134, - strand, RNAz p=0.999734

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1021-1134, gnl|bosTau2|chr11 (3112719-3112607)
               

               
               1021-1134, gnl|Hg17|chr19 (50721980-50722080)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1021-1134, gnl|bosTau2|chr11 (3112719-3112607)
               

               
               1021-1134, gnl|Hg17|chr19 (50721980-50722080)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ill (0.351185)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1021-1134, gnl\|bosTau2\|chr11 (3112719-3112607)
	1021-1134, gnl\|Hg17\|chr19 (50721980-50722080)

	ill (0.351185)
	cov (0.264306)
	med (0.232504)
	nbm (0.198649)
	jej (0.197844)
	nlu (0.191681)
	eye (0.170503)
	cki (0.165235)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	ute (0.132784)
	pgl (0.118483)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)