Ss1.1-rmed26c_e7.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGGCGTCTTCCTTTCTGTCCCTGACGCCGCCGAGGTCGCACGCGCGAGGCCTTTCTG CCGCCGCCGAGATGCGTTACGTCGCTTCCTACCTGCTGGCCGCCCTCGGGGGCAATACTT CTCCTAGCGCCAAGGACATCAAGAAGATCCTGGACAGCGTGGGCATCGAGGCGGACGACG ATCGGCTCAACAAGGTCATCAGTGAGTTGAACGGGAAGAACATCGAGGACGTCATTGCCC AGGGCATTGGCAAGCTGGCCAGCGTACCTTCTGGCGGGGCTGTGGCTGTCGCCGCTGCCC CAGGGTCTGCAGCTCCTGCTGCAGGTTCTGCCCCAGCTGCAGCAGAGGAGAAGAAAGAAG AGAAGAAGGAGGAGTCGGAGGAGTCAGACGACGACATGGGCTTCGGCTTGTTTGACTAGA GTCCTGCTCCCTGCAAATAAAAACCCTTTGTACGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGGCGTCTTCCTTTCTGTCCCTGACGCCGCCGAGGTCGCACGCGCGAGGCCTTTCTG CCGCCGCCGAGATGCGTTACGTCGCTTCCTACCTGCTGGCCGCCCTCGGGGGCAATACTT CTCCTAGCGCCAAGGACATCAAGAAGATCCTGGACAGCGTGGGCATCGAGGCGGACGACG ATCGGCTCAACAAGGTCATCAGTGAGTTGAACGGGAAGAACATCGAGGACGTCATTGCCC AGGGCATTGGCAAGCTGGCCAGCGTACCTTCTGGCGGGGCTGTGGCTGTCGCCGCTGCCC CAGGGTCTGCAGCTCCTGCTGCAGGTTCTGCCCCAGCTGCAGCAGAGGAGAAGAAAGAAG AGAAGAAGGAGGAGTCGGAGGAGTCAGACGACGACATGGGCTTCGGCTTGTTTGACTAGA GTCCTGCTCCCTGCAAATAAAAACCCTTTGTACGTAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 340-456, + strand, RNAz p=0.716527 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 340-456, + strand, RNAz p=0.716527 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001004, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 20-312, gnl|bosTau2|chr4 (64489401-64489107) | |
| 20-312, gnl|Hg17|chr11 (107284290-107284637) | |
| 20-312, gnl|Mm7|chr12 (73589821-73589494) | |
| 48-196, gnl|bosTau2|chr29 (44810200-44810348) | |
| 48-196, gnl|Hg17|chr11 (800211-800359) | |
| 48-196, gnl|Mm7|chr7 (137865147-137865297) | |
| 340-456, gnl|bosTau2|chr29 (44811989-44812105) | |
| 340-456, gnl|canFam2|chr18 (48218039-48218164) | |
| 340-456, gnl|danRer3|chrUn (14507318-14507193) | |
| 340-456, gnl|dasNov1|scaffold_264214 (398-275) | |
| 340-456, gnl|echTel1|scaffold_160932 (7017-7135) | |
| 340-456, gnl|fr1|chrUn (280370775-280370866) | |
| 340-456, gnl|galGal2|chrUn (154193212-154193081) | |
| 340-456, gnl|hg17|chr11 (802749-802875) | |
| 340-456, gnl|Hg17|chr11 (802757-802872) | |
| 340-456, gnl|loxAfr1|scaffold_170082 (429-324) | |
| 340-456, gnl|mm7|chr7 (137868490-137868609) | |
| 340-456, gnl|Mm7|chr7 (137868493-137868608) | |
| 340-456, gnl|oryCun1|scaffold_148637 (4670-4569) | |
| 340-456, gnl|panTro1|chr9 (877359-877485) | |
| 340-456, gnl|rheMac2|chr14 (623769-623894) | |
| 340-456, gnl|rn3|chr1 (201791089-201791202) | |
| 340-456, gnl|tetNig1|chr11 (7809355-7809261) | |
| 340-456, gnl|xenTro1|scaffold_154 (15104-15219) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-312, gnl|bosTau2|chr4 (64489401-64489107) | |
| 20-312, gnl|Hg17|chr11 (107284290-107284637) | |
| 20-312, gnl|Mm7|chr12 (73589821-73589494) | |
| 48-196, gnl|bosTau2|chr29 (44810200-44810348) | |
| 48-196, gnl|Hg17|chr11 (800211-800359) | |
| 48-196, gnl|Mm7|chr7 (137865147-137865297) | |
| 340-456, gnl|bosTau2|chr29 (44811989-44812105) | |
| 340-456, gnl|canFam2|chr18 (48218039-48218164) | |
| 340-456, gnl|danRer3|chrUn (14507318-14507193) | |
| 340-456, gnl|dasNov1|scaffold_264214 (398-275) | |
| 340-456, gnl|echTel1|scaffold_160932 (7017-7135) | |
| 340-456, gnl|fr1|chrUn (280370775-280370866) | |
| 340-456, gnl|galGal2|chrUn (154193212-154193081) | |
| 340-456, gnl|hg17|chr11 (802749-802875) | |
| 340-456, gnl|Hg17|chr11 (802757-802872) | |
| 340-456, gnl|loxAfr1|scaffold_170082 (429-324) | |
| 340-456, gnl|mm7|chr7 (137868490-137868609) | |
| 340-456, gnl|Mm7|chr7 (137868493-137868608) | |
| 340-456, gnl|oryCun1|scaffold_148637 (4670-4569) | |
| 340-456, gnl|panTro1|chr9 (877359-877485) | |
| 340-456, gnl|rheMac2|chr14 (623769-623894) | |
| 340-456, gnl|rn3|chr1 (201791089-201791202) | |
| 340-456, gnl|tetNig1|chr11 (7809355-7809261) | |
| 340-456, gnl|xenTro1|scaffold_154 (15104-15219) |
| Expressed library(ies): 71 entry(ies) | More info |
| Expressed library(ies): 71 entry(ies) | Help | Less info |
| cki (19.002) | |
| cst (14.2837) | |
| sto (10.6096) | |
| cmu (10.438) | |
| cje (9.74884) | |
| che (9.13304) | |
| cut (7.13679) | |
| mcp (4.77816) | |
| nca (4.24309) | |
| elu (4.23892) | |
| cag (4.23344) | |
| amn (4.17711) | |
| lnt (3.98463) | |
| csp (3.70729) | |
| fty (3.69263) | |
| eje (3.55802) | |
| nms (3.42173) | |
| nbm (3.37704) | |
| cga (3.34915) | |
| duo (3.28322) | |
| cly (3.25733) | |
| med (3.1388) | |
| nep (2.57495) | |
| cov (2.5109) | |
| ton (2.457) | |
| pty (2.42615) | |
| nmm (2.39044) | |
| ebs (2.24772) | |
| nje (1.99104) | |
| ecc (1.9556) | |
| nco (1.94081) | |
| nlu (1.91681) | |
| ece (1.83444) | |
| eru (1.80072) | |
| cte (1.75644) | |
| eep (1.7159) | |
| fce (1.62955) | |
| csk (1.54821) | |
| hlv (1.53182) | |
| eli (1.51814) | |
| jca (1.36752) | |
| col (1.36505) | |
| fhi (1.35662) | |
| ese (1.26502) | |
| mas (1.26183) | |
| cli (1.22249) | |
| fli (1.21729) | |
| eye (1.02302) | |
| fcc (0.988924) | |
| ute (0.929491) | |
| jej (0.890296) | |
| ill (0.877963) | |
| hyp (0.85702) | |
| aor (0.781097) | |
| sag (0.730861) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| vin (0.332557) | |
| pla (0.267344) | |
| ova (0.258264) | |
| clu (0.239292) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 71 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (19.002) | |
| cst (14.2837) | |
| sto (10.6096) | |
| cmu (10.438) | |
| cje (9.74884) | |
| che (9.13304) | |
| cut (7.13679) | |
| mcp (4.77816) | |
| nca (4.24309) | |
| elu (4.23892) | |
| cag (4.23344) | |
| amn (4.17711) | |
| lnt (3.98463) | |
| csp (3.70729) | |
| fty (3.69263) | |
| eje (3.55802) | |
| nms (3.42173) | |
| nbm (3.37704) | |
| cga (3.34915) | |
| duo (3.28322) | |
| cly (3.25733) | |
| med (3.1388) | |
| nep (2.57495) | |
| cov (2.5109) | |
| ton (2.457) | |
| pty (2.42615) | |
| nmm (2.39044) | |
| ebs (2.24772) | |
| nje (1.99104) | |
| ecc (1.9556) | |
| nco (1.94081) | |
| nlu (1.91681) | |
| ece (1.83444) | |
| eru (1.80072) | |
| cte (1.75644) | |
| eep (1.7159) | |
| fce (1.62955) | |
| csk (1.54821) | |
| hlv (1.53182) | |
| eli (1.51814) | |
| jca (1.36752) | |
| col (1.36505) | |
| fhi (1.35662) | |
| ese (1.26502) | |
| mas (1.26183) | |
| cli (1.22249) | |
| fli (1.21729) | |
| eye (1.02302) | |
| fcc (0.988924) | |
| ute (0.929491) | |
| jej (0.890296) | |
| ill (0.877963) | |
| hyp (0.85702) | |
| aor (0.781097) | |
| sag (0.730861) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| vin (0.332557) | |
| pla (0.267344) | |
| ova (0.258264) | |
| clu (0.239292) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pgl (0.118483) | |
| ldo (0.0970026) |