Non-Coding RNA Search

Ss1.1-rmed26c_f5.5

Sequence:


               
               AATTTAGAAAAGAAATTCCTCAATGATTTTTCCCCTTTGCTAAAAGCAAGGAAACTTTTA
ATATATATAATCTATGAATCTTTATTATCACTGAAAGAATTTTAGCAGTACTTTATACCA
TAATACCATAACTTGCCTTAGAGCCTGGGGTTTCAGAAAGTTCTAAGGGAAACCTCATCA
TCCTTGTTAAAGTCTGGATGACTTCATCAGATAGTGTTTAATATGTTAGGAAGGGCCTTT
CAATCTTGGACCATCTACCACTTAAATATATGGCTTTCATGGTGACACTTGAAGCACATT
TAAAAAATATTATGATATTATTCTGTTGACCTGCAGAATTCTTCATTATAACACTACCTC
AAGACAAATGATAGACTGTTGGTTAAAATAAATTGAGTTTCCAGTTTAAGGATCAAATAA
AATTTTACAAATAGGAGTCATCGAATAATTCAACAGTCAAGATCATGCTGGATCTAGATT
GTCAGTTGCCTCTTGACAATAGAGTAATGGGAACATTTCACTCACTAGTGATAAATAGCA
TAGTTATCAGCCAGTGAGTTATGTGAAGAGGTTTCAAGTTGCAAAGTTTGAAAAGAATTA
CTTCCCTTTAGAACTGGTTTTCTACATGGGCCAATTCTATGTCCATTCACCTTAAAGCCA
AAAAGAATTGCCCACCCTCAACAGTTAAAGGATTAAAATACCCAACTGCTATACCAGAAT
GGCAGAACCAATATTCGAATATTCCGGCATTGAATGCCTGATAAATTTTTGTCACGTTAT
ATATAAATTTGATGTATATTAATACCCAGTAATTTTTTCTTGAGGATTTTGTATACACTG
TGATATATTAGGATAAGTTTTTGTAGTTCAGAGGAATTTCAAGTAGTTTTTAGACAAAAC
ATATCCATGAGTGTGAAAAAGCTGTGTTGAAGAATAGATTGCATTACACATTTACCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTAGAAAAGAAATTCCTCAATGATTTTTCCCCTTTGCTAAAAGCAAGGAAACTTTTA
ATATATATAATCTATGAATCTTTATTATCACTGAAAGAATTTTAGCAGTACTTTATACCA
TAATACCATAACTTGCCTTAGAGCCTGGGGTTTCAGAAAGTTCTAAGGGAAACCTCATCA
TCCTTGTTAAAGTCTGGATGACTTCATCAGATAGTGTTTAATATGTTAGGAAGGGCCTTT
CAATCTTGGACCATCTACCACTTAAATATATGGCTTTCATGGTGACACTTGAAGCACATT
TAAAAAATATTATGATATTATTCTGTTGACCTGCAGAATTCTTCATTATAACACTACCTC
AAGACAAATGATAGACTGTTGGTTAAAATAAATTGAGTTTCCAGTTTAAGGATCAAATAA
AATTTTACAAATAGGAGTCATCGAATAATTCAACAGTCAAGATCATGCTGGATCTAGATT
GTCAGTTGCCTCTTGACAATAGAGTAATGGGAACATTTCACTCACTAGTGATAAATAGCA
TAGTTATCAGCCAGTGAGTTATGTGAAGAGGTTTCAAGTTGCAAAGTTTGAAAAGAATTA
CTTCCCTTTAGAACTGGTTTTCTACATGGGCCAATTCTATGTCCATTCACCTTAAAGCCA
AAAAGAATTGCCCACCCTCAACAGTTAAAGGATTAAAATACCCAACTGCTATACCAGAAT
GGCAGAACCAATATTCGAATATTCCGGCATTGAATGCCTGATAAATTTTTGTCACGTTAT
ATATAAATTTGATGTATATTAATACCCAGTAATTTTTTCTTGAGGATTTTGTATACACTG
TGATATATTAGGATAAGTTTTTGTAGTTCAGAGGAATTTCAAGTAGTTTTTAGACAAAAC
ATATCCATGAGTGTGAAAAAGCTGTGTTGAAGAATAGATTGCATTACACATTTACCCGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-636, gnl|bosTau2|chr20 (17510815-17511441)
               

               
               3-636, gnl|Hg17|chr5 (50176710-50177350)
               

               
               3-636, gnl|Mm7|chr13 (114060594-114059984)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-636, gnl|bosTau2|chr20 (17510815-17511441)
               

               
               3-636, gnl|Hg17|chr5 (50176710-50177350)
               

               
               3-636, gnl|Mm7|chr13 (114060594-114059984)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cbl (0.229595)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               med (0.116252)

	3-636, gnl\|bosTau2\|chr20 (17510815-17511441)
	3-636, gnl\|Hg17\|chr5 (50176710-50177350)
	3-636, gnl\|Mm7\|chr13 (114060594-114059984)

	cbl (0.229595)
	lun (0.150489)
	liv (0.146284)
	ret (0.128733)
	med (0.116252)