Non-Coding RNA Search

Ss1.1-rmed26c_k7.5.5

Sequence:


               
               AGAGGAGGTGAGGTGCGGCCTCTTGTCCGCCCGCGTGGCCGTCTCGCGCCCGCCGCCGTG
GGTCTGTGCCCTTGCCTGGCCTCTCTCGCTGCGCCGCTCGCCTCCCTGGCTGCCCCCGAG
CCCCGCCGCCCTAGGTCGCTGTGCATTTTCATTTTCTTGTCGCTCGTAGTCTCGGCCGCC
TAAGTTCAGCTCCTCTACCTTAGGCCGCCCAGCCCCAGGAGGTGAGGTGCGGCCTCTTGT
CCGCCCGCGTGGGCCGCACGGAGAGGAGGTCCCCACACGCGGCCTTCCCCTGTTGTTCAC
CGTCGGCCTGCTGCTCCCTTGACATTTCCCGGGCCCCACGGAGAGGAGCTGCCGTTATGT
CCGCGCACCTGCAATGGATGGTGGTGCGGAACTGCTCCAGCTTCCTCATCAAGAGGAACA
AGCAGACGTACAGCACCGAACCCAATAACCTGAAGGCCCGCAACTCCTTCCGCTACAACG
GGCTGATTCACCACAAGACCGTGGGCGTGGAGCCGGCGGCGGACGGCAAAGGGGTCGTGG
TGGTGATGAAGCGGAGATCCGGCCAGCGAAAGCCGGCCACTTCCTACGTGCGGACCACCA
TCAACAAGAACGCCCGAGCCACTCTCAGCAGCATCCGGCACATGATCCGAAAGAACAAGT
ACCGCCCGGATTTGCGCATGGCCGCCATCCGCAGAGCCAGCGCCATCCTGCGCAGCCAGA
AGCCAGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGCGCCTGAGCCCTGCCCT
TCCCCAAAGCAATAAAGACAACAGTCTTCTCCTTGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAGGTGAGGTGCGGCCTCTTGTCCGCCCGCGTGGCCGTCTCGCGCCCGCCGCCGTG
GGTCTGTGCCCTTGCCTGGCCTCTCTCGCTGCGCCGCTCGCCTCCCTGGCTGCCCCCGAG
CCCCGCCGCCCTAGGTCGCTGTGCATTTTCATTTTCTTGTCGCTCGTAGTCTCGGCCGCC
TAAGTTCAGCTCCTCTACCTTAGGCCGCCCAGCCCCAGGAGGTGAGGTGCGGCCTCTTGT
CCGCCCGCGTGGGCCGCACGGAGAGGAGGTCCCCACACGCGGCCTTCCCCTGTTGTTCAC
CGTCGGCCTGCTGCTCCCTTGACATTTCCCGGGCCCCACGGAGAGGAGCTGCCGTTATGT
CCGCGCACCTGCAATGGATGGTGGTGCGGAACTGCTCCAGCTTCCTCATCAAGAGGAACA
AGCAGACGTACAGCACCGAACCCAATAACCTGAAGGCCCGCAACTCCTTCCGCTACAACG
GGCTGATTCACCACAAGACCGTGGGCGTGGAGCCGGCGGCGGACGGCAAAGGGGTCGTGG
TGGTGATGAAGCGGAGATCCGGCCAGCGAAAGCCGGCCACTTCCTACGTGCGGACCACCA
TCAACAAGAACGCCCGAGCCACTCTCAGCAGCATCCGGCACATGATCCGAAAGAACAAGT
ACCGCCCGGATTTGCGCATGGCCGCCATCCGCAGAGCCAGCGCCATCCTGCGCAGCCAGA
AGCCAGTGATGGTGAAGAGGAAGCGGACCCGCCCCACCAAGAGCGCCTGAGCCCTGCCCT
TCCCCAAAGCAATAAAGACAACAGTCTTCTCCTTGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O60251_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O60251_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               430-797, gnl|bosTau2|chr14 (42129829-42129463)
               

               
               430-797, gnl|Hg17|chr19 (12232019-12232377)
               

               
               430-797, gnl|Mm7|chr5 (132718172-132718531)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               430-797, gnl|bosTau2|chr14 (42129829-42129463)
               

               
               430-797, gnl|Hg17|chr19 (12232019-12232377)
               

               
               430-797, gnl|Mm7|chr5 (132718172-132718531)

Expressed library(ies): 53 entry(ies)

More info

Expressed library(ies): 53 entry(ies)

Help | Less info


               
               cag (6.65255)
               

               
               mcp (5.9727)
               

               
               ese (4.80708)
               

               
               cov (4.7575)
               

               
               cly (4.70503)
               

               
               fty (4.39599)
               

               
               csp (4.35203)
               

               
               eje (3.95335)
               

               
               cga (3.90734)
               

               
               nco (3.88161)
               

               
               med (3.72007)
               

               
               nje (3.65024)
               

               
               lnt (3.13078)
               

               
               nlu (3.0669)
               

               
               nep (2.9428)
               

               
               amn (2.92398)
               

               
               eru (2.88115)
               

               
               nca (2.73748)
               

               
               eep (2.69641)
               

               
               pty (2.56886)
               

               
               elu (2.31214)
               

               
               ecc (2.3007)
               

               
               nmm (1.99203)
               

               
               mas (1.89274)
               

               
               jca (1.59544)
               

               
               ute (1.59341)
               

               
               nbm (1.58919)
               

               
               ill (1.58033)
               

               
               hyp (1.42837)
               

               
               jej (1.3849)
               

               
               eli (1.36633)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nms (1.28315)
               

               
               ton (1.2285)
               

               
               cli (1.22249)
               

               
               fli (1.21729)
               

               
               ebs (1.06471)
               

               
               duo (1.03681)
               

               
               col (0.975039)
               

               
               ece (0.917221)
               

               
               hlv (0.696282)
               

               
               fcc (0.593354)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               ctl (0.459207)
               

               
               cst (0.420109)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               rec (0.17307)

Expressed library(ies): 53 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (6.65255)
               

               
               mcp (5.9727)
               

               
               ese (4.80708)
               

               
               cov (4.7575)
               

               
               cly (4.70503)
               

               
               fty (4.39599)
               

               
               csp (4.35203)
               

               
               eje (3.95335)
               

               
               cga (3.90734)
               

               
               nco (3.88161)
               

               
               med (3.72007)
               

               
               nje (3.65024)
               

               
               lnt (3.13078)
               

               
               nlu (3.0669)
               

               
               nep (2.9428)
               

               
               amn (2.92398)
               

               
               eru (2.88115)
               

               
               nca (2.73748)
               

               
               eep (2.69641)
               

               
               pty (2.56886)
               

               
               elu (2.31214)
               

               
               ecc (2.3007)
               

               
               nmm (1.99203)
               

               
               mas (1.89274)
               

               
               jca (1.59544)
               

               
               ute (1.59341)
               

               
               nbm (1.58919)
               

               
               ill (1.58033)
               

               
               hyp (1.42837)
               

               
               jej (1.3849)
               

               
               eli (1.36633)
               

               
               eye (1.36402)
               

               
               fce (1.35796)
               

               
               nms (1.28315)
               

               
               ton (1.2285)
               

               
               cli (1.22249)
               

               
               fli (1.21729)
               

               
               ebs (1.06471)
               

               
               duo (1.03681)
               

               
               col (0.975039)
               

               
               ece (0.917221)
               

               
               hlv (0.696282)
               

               
               fcc (0.593354)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               cki (0.495704)
               

               
               ctl (0.459207)
               

               
               cst (0.420109)
               

               
               sto (0.359648)
               

               
               clu (0.358938)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               rec (0.17307)

	430-797, gnl\|bosTau2\|chr14 (42129829-42129463)
	430-797, gnl\|Hg17\|chr19 (12232019-12232377)
	430-797, gnl\|Mm7\|chr5 (132718172-132718531)

	cag (6.65255)
	mcp (5.9727)
	ese (4.80708)
	cov (4.7575)
	cly (4.70503)
	fty (4.39599)
	csp (4.35203)
	eje (3.95335)
	cga (3.90734)
	nco (3.88161)
	med (3.72007)
	nje (3.65024)
	lnt (3.13078)
	nlu (3.0669)
	nep (2.9428)
	amn (2.92398)
	eru (2.88115)
	nca (2.73748)
	eep (2.69641)
	pty (2.56886)
	elu (2.31214)
	ecc (2.3007)
	nmm (1.99203)
	mas (1.89274)
	jca (1.59544)
	ute (1.59341)
	nbm (1.58919)
	ill (1.58033)
	hyp (1.42837)
	jej (1.3849)
	eli (1.36633)
	eye (1.36402)
	fce (1.35796)
	nms (1.28315)
	ton (1.2285)
	cli (1.22249)
	fli (1.21729)
	ebs (1.06471)
	duo (1.03681)
	col (0.975039)
	ece (0.917221)
	hlv (0.696282)
	fcc (0.593354)
	fbs (0.526039)
	fhi (0.508733)
	cki (0.495704)
	ctl (0.459207)
	cst (0.420109)
	sto (0.359648)
	clu (0.358938)
	pla (0.267344)
	ova (0.258264)
	rec (0.17307)