Non-Coding RNA Search

Ss1.1-rmed26c_o18.5

Sequence:


               
               AGCAGGCCATAGAGGTGCTGACCCGCTCCAGCCTGGAAGTTGAGCTGGCGGCCAAAGAGC
GGGAGATCGCCCAGCTGGTGGAGGACGTGCAGCGACTCCAGGCCAGCCTCACCAAGCTGC
GGGAGAACTCGGCCAGCCAGATCTCCCAGCTCGAGCAGCAGCTGAGCGCCAAGAACAGCA
CCCTCAAACAACTGGAAGAAAAGCTCAAAGGACAGGCTGACTATGAAGAGGTGAAGAAAG
AGCTCAACATCCTGAAATCCATGGAGTTCGCACCCTCCGAAGGAGCTGGGACGCAGGACG
CATCCAGGCCCCTGGAGGTGCTGCTGCTGGAGAAGAACCGCTCGCTGCAGTCTGAGAACG
CCGCCCTGCGCATCTCCAACAGCGACCTGAGCGGGCGCTGTGCGGAGCTGCAGGTCCACG
TGACGGAGGTCATGGCCACGGCAGCCGAGCAGAGGGAGCTGATCGCCCGCTTGGAGCAGG
ACCTCAGCACCATCCAGTCCATCCAGAGGCCGGATGCGGAGGGCGCAGCCGAGCTCGGCC
TGGAGAAGATTCCCGAACCCATCAAGGAGGCCACTGCCCTGTTCTACGGACCCTCAGCAC
CGGCCAGCGGCACCCTCCCCGAGGGCCAGGTCGACTCTCTGCTCTCCATCATCTCCAGCC
AGAGGGAGCGCTTCCGTGCCCGGAACCAGGAGCTGGAGGCTGAGAACCGCCTCGCCCAGC
ACACCATCCAAGCCCTGCAGAGCGAGCTGGACAGCCTGCGTGCTGACAACATCAAGCTCT
ACGAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCGGCGGCAGCGACGACACGG
AACTGCGGTACTCGACCCAGTATGAGGAGCGCCTGGATCCCTTCTCCTCCTTCAGCAAGC
GGGAGCGGCAGCGGAAGTACCTGAAGCCTGAGCCCCTGGGACAAGGCCACGCTCAGCATG
GGGCGGCTGGTTCTCTCCAACAAGATGGCCCGCACCATCGGCTTCTTCTACACGCTGTTC
CTGCACTGCTTGGTCTTCCTGGTGCTCTACAAGCTGGCATGGAGCGAG------------
GATTGTGCCACCTTCTGTGCCAAGAAGTTTGCCGATCACCTGCACAAGTTCCACGAGAAT
GACCACGGGGCAGCAGCCGGGTGACTTGTGGCAGTGACGTCCTGGGGCTTCCCCAGGATG
GTAATGGCTGCGTTCCCCTCCCCTGCTTGTTCAGCTGCTTCTAATGACATAGGCTTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGCCATAGAGGTGCTGACCCGCTCCAGCCTGGAAGTTGAGCTGGCGGCCAAAGAGC
GGGAGATCGCCCAGCTGGTGGAGGACGTGCAGCGACTCCAGGCCAGCCTCACCAAGCTGC
GGGAGAACTCGGCCAGCCAGATCTCCCAGCTCGAGCAGCAGCTGAGCGCCAAGAACAGCA
CCCTCAAACAACTGGAAGAAAAGCTCAAAGGACAGGCTGACTATGAAGAGGTGAAGAAAG
AGCTCAACATCCTGAAATCCATGGAGTTCGCACCCTCCGAAGGAGCTGGGACGCAGGACG
CATCCAGGCCCCTGGAGGTGCTGCTGCTGGAGAAGAACCGCTCGCTGCAGTCTGAGAACG
CCGCCCTGCGCATCTCCAACAGCGACCTGAGCGGGCGCTGTGCGGAGCTGCAGGTCCACG
TGACGGAGGTCATGGCCACGGCAGCCGAGCAGAGGGAGCTGATCGCCCGCTTGGAGCAGG
ACCTCAGCACCATCCAGTCCATCCAGAGGCCGGATGCGGAGGGCGCAGCCGAGCTCGGCC
TGGAGAAGATTCCCGAACCCATCAAGGAGGCCACTGCCCTGTTCTACGGACCCTCAGCAC
CGGCCAGCGGCACCCTCCCCGAGGGCCAGGTCGACTCTCTGCTCTCCATCATCTCCAGCC
AGAGGGAGCGCTTCCGTGCCCGGAACCAGGAGCTGGAGGCTGAGAACCGCCTCGCCCAGC
ACACCATCCAAGCCCTGCAGAGCGAGCTGGACAGCCTGCGTGCTGACAACATCAAGCTCT
ACGAGAAGATCAAGTTCCTGCAGAGCTACCCTGGCCGGGGCGGCGGCAGCGACGACACGG
AACTGCGGTACTCGACCCAGTATGAGGAGCGCCTGGATCCCTTCTCCTCCTTCAGCAAGC
GGGAGCGGCAGCGGAAGTACCTGAAGCCTGAGCCCCTGGGACAAGGCCACGCTCAGCATG
GGGCGGCTGGTTCTCTCCAACAAGATGGCCCGCACCATCGGCTTCTTCTACACGCTGTTC
CTGCACTGCTTGGTCTTCCTGGTGCTCTACAAGCTGGCATGGAGCGAG------------
GATTGTGCCACCTTCTGTGCCAAGAAGTTTGCCGATCACCTGCACAAGTTCCACGAGAAT
GACCACGGGGCAGCAGCCGGGTGACTTGTGGCAGTGACGTCCTGGGGCTTCCCCAGGATG
GTAATGGCTGCGTTCCCCTCCCCTGCTTGTTCAGCTGCTTCTAATGACATAGGCTTCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58HF9_MACMU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58HF9_MACMU

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.962467

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.962467

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-187, gnl|bosTau2|chr25 (32035987-32036173)
               

               
               1-187, gnl|Hg17|chr7 (101415185-101415371)
               

               
               1-187, gnl|Mm7|chr5 (135298217-135298031)
               


               
               393-522, gnl|bosTau2|chr25 (32113588-32113717)
               

               
               393-522, gnl|galGal2|chr19 (3846733-3846840)
               

               
               393-522, gnl|hg17|chr7 (101510072-101510179)
               

               
               393-522, gnl|Hg17|chr7 (101510071-101510200)
               

               
               393-522, gnl|mm7|chr5 (135229322-135229215)
               

               
               393-522, gnl|Mm7|chr5 (135229321-135229192)
               

               
               393-522, gnl|oryCun1|scaffold_198342 (89364-89441)
               

               
               393-522, gnl|panTro1|chr6 (103300469-103300576)
               

               
               393-522, gnl|rheMac2|chr3 (49581708-49581815)
               

               
               393-522, gnl|rn3|chr12 (21522366-21522473)
               

               
               393-522, gnl|tetNig1|chr16 (1920525-1920632)
               


               
               702-819, gnl|bosTau2|chr25 (32117826-32117943)
               

               
               702-819, gnl|Hg17|chr7 (101514655-101514772)
               

               
               702-819, gnl|Mm7|chr5 (135225463-135225346)
               


               
               1081-1248, gnl|bosTau2|chr25 (32120944-32121109)
               

               
               1081-1248, gnl|Hg17|chr7 (101519733-101519898)
               

               
               1081-1248, gnl|Mm7|chr5 (135220285-135220111)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-187, gnl|bosTau2|chr25 (32035987-32036173)
               

               
               1-187, gnl|Hg17|chr7 (101415185-101415371)
               

               
               1-187, gnl|Mm7|chr5 (135298217-135298031)
               


               
               393-522, gnl|bosTau2|chr25 (32113588-32113717)
               

               
               393-522, gnl|galGal2|chr19 (3846733-3846840)
               

               
               393-522, gnl|hg17|chr7 (101510072-101510179)
               

               
               393-522, gnl|Hg17|chr7 (101510071-101510200)
               

               
               393-522, gnl|mm7|chr5 (135229322-135229215)
               

               
               393-522, gnl|Mm7|chr5 (135229321-135229192)
               

               
               393-522, gnl|oryCun1|scaffold_198342 (89364-89441)
               

               
               393-522, gnl|panTro1|chr6 (103300469-103300576)
               

               
               393-522, gnl|rheMac2|chr3 (49581708-49581815)
               

               
               393-522, gnl|rn3|chr12 (21522366-21522473)
               

               
               393-522, gnl|tetNig1|chr16 (1920525-1920632)
               


               
               702-819, gnl|bosTau2|chr25 (32117826-32117943)
               

               
               702-819, gnl|Hg17|chr7 (101514655-101514772)
               

               
               702-819, gnl|Mm7|chr5 (135225463-135225346)
               


               
               1081-1248, gnl|bosTau2|chr25 (32120944-32121109)
               

               
               1081-1248, gnl|Hg17|chr7 (101519733-101519898)
               

               
               1081-1248, gnl|Mm7|chr5 (135220285-135220111)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.264306)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	1-187, gnl\|bosTau2\|chr25 (32035987-32036173)
	1-187, gnl\|Hg17\|chr7 (101415185-101415371)
	1-187, gnl\|Mm7\|chr5 (135298217-135298031)

	393-522, gnl\|bosTau2\|chr25 (32113588-32113717)
	393-522, gnl\|galGal2\|chr19 (3846733-3846840)
	393-522, gnl\|hg17\|chr7 (101510072-101510179)
	393-522, gnl\|Hg17\|chr7 (101510071-101510200)
	393-522, gnl\|mm7\|chr5 (135229322-135229215)
	393-522, gnl\|Mm7\|chr5 (135229321-135229192)
	393-522, gnl\|oryCun1\|scaffold_198342 (89364-89441)
	393-522, gnl\|panTro1\|chr6 (103300469-103300576)
	393-522, gnl\|rheMac2\|chr3 (49581708-49581815)
	393-522, gnl\|rn3\|chr12 (21522366-21522473)
	393-522, gnl\|tetNig1\|chr16 (1920525-1920632)

	702-819, gnl\|bosTau2\|chr25 (32117826-32117943)
	702-819, gnl\|Hg17\|chr7 (101514655-101514772)
	702-819, gnl\|Mm7\|chr5 (135225463-135225346)

	1081-1248, gnl\|bosTau2\|chr25 (32120944-32121109)
	1081-1248, gnl\|Hg17\|chr7 (101519733-101519898)
	1081-1248, gnl\|Mm7\|chr5 (135220285-135220111)