Non-Coding RNA Search

Ss1.1-rmed27c_a24.5

Sequence:


               
               GGCGAAGAAGCAACGCGGAGACGGTGGTGACTGGAGTGCGCGGTCGCGACAACTACTGCC
ACCGCCATGAGCCTCCTCAACAAGCCCAAGAGTGAGATGACGCCAGAGGAGCTGCAGAAG
CGGGAGGAGGAGGAGTTTAACACGGGGCCGCTGTCCGTGCTCACACAGTCGGTCAAGAAC
AACACCCAAGTGCTCATCAACTGCCGCAACAACAAGAAGCTCCTGGGCCGCGTGAAGGCC
TTTGACAGGCACTGCAACATGGTGCTGGAGAACGTGAAGGAGATGTGGACTGAGGTCCCC
AAGAGCGGCAAGGGCAAGAAGAAGTCCAAGCCCGTCAACAAGGACCGCTACATCTCCAAG
ATGTTCCTGCGCGGGGACTCGGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGGCAAG
TAGGCGCCCGCCCGCCCTCCTGCTCCCTCCTTCGTGAAGACCTGCCCTTCGTGATGGGAA
TAATAAAGTCCTGCGTTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAAGAAGCAACGCGGAGACGGTGGTGACTGGAGTGCGCGGTCGCGACAACTACTGCC
ACCGCCATGAGCCTCCTCAACAAGCCCAAGAGTGAGATGACGCCAGAGGAGCTGCAGAAG
CGGGAGGAGGAGGAGTTTAACACGGGGCCGCTGTCCGTGCTCACACAGTCGGTCAAGAAC
AACACCCAAGTGCTCATCAACTGCCGCAACAACAAGAAGCTCCTGGGCCGCGTGAAGGCC
TTTGACAGGCACTGCAACATGGTGCTGGAGAACGTGAAGGAGATGTGGACTGAGGTCCCC
AAGAGCGGCAAGGGCAAGAAGAAGTCCAAGCCCGTCAACAAGGACCGCTACATCTCCAAG
ATGTTCCTGCGCGGGGACTCGGTCATCGTGGTCCTGCGGAACCCGCTCATCGCCGGCAAG
TAGGCGCCCGCCCGCCCTCCTGCTCCCTCCTTCGTGAAGACCTGCCCTTCGTGATGGGAA
TAATAAAGTCCTGCGTTTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               SMD2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               SMD2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-377, + strand, RNAz p=0.956049

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-377, + strand, RNAz p=0.956049

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               58-520, gnl|bosTau2|chr27 (22510912-22510456)
               

               
               58-520, gnl|Hg17|chr10 (91728445-91728924)
               

               
               58-520, gnl|Mm7|chr10 (127513155-127513612)
               


               
               59-440, gnl|bosTau2|chr14 (37217334-37216960)
               

               
               59-440, gnl|Hg17|chr10 (91728448-91728823)
               

               
               59-440, gnl|Mm7|chr10 (127513156-127513535)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-520, gnl|bosTau2|chr27 (22510912-22510456)
               

               
               58-520, gnl|Hg17|chr10 (91728445-91728924)
               

               
               58-520, gnl|Mm7|chr10 (127513155-127513612)
               


               
               59-440, gnl|bosTau2|chr14 (37217334-37216960)
               

               
               59-440, gnl|Hg17|chr10 (91728448-91728823)
               

               
               59-440, gnl|Mm7|chr10 (127513156-127513535)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

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               eep (1.22564)
               

               
               csp (1.1283)
               

               
               fty (1.05504)
               

               
               ill (1.05356)
               

               
               eje (0.988338)
               

               
               col (0.975039)
               

               
               nje (0.8296)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               med (0.697512)
               

               
               hlv (0.696282)
               

               
               mcp (0.682594)
               

               
               cov (0.660764)
               

               
               eru (0.60024)
               

               
               lnt (0.569233)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pgl (0.118483)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (1.22564)
               

               
               csp (1.1283)
               

               
               fty (1.05504)
               

               
               ill (1.05356)
               

               
               eje (0.988338)
               

               
               col (0.975039)
               

               
               nje (0.8296)
               

               
               elu (0.770713)
               

               
               cag (0.755972)
               

               
               med (0.697512)
               

               
               hlv (0.696282)
               

               
               mcp (0.682594)
               

               
               cov (0.660764)
               

               
               eru (0.60024)
               

               
               lnt (0.569233)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               fhi (0.508733)
               

               
               ese (0.506009)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               amn (0.417711)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pgl (0.118483)

	58-520, gnl\|bosTau2\|chr27 (22510912-22510456)
	58-520, gnl\|Hg17\|chr10 (91728445-91728924)
	58-520, gnl\|Mm7\|chr10 (127513155-127513612)

	59-440, gnl\|bosTau2\|chr14 (37217334-37216960)
	59-440, gnl\|Hg17\|chr10 (91728448-91728823)
	59-440, gnl\|Mm7\|chr10 (127513156-127513535)

	eep (1.22564)
	csp (1.1283)
	fty (1.05504)
	ill (1.05356)
	eje (0.988338)
	col (0.975039)
	nje (0.8296)
	elu (0.770713)
	cag (0.755972)
	med (0.697512)
	hlv (0.696282)
	mcp (0.682594)
	cov (0.660764)
	eru (0.60024)
	lnt (0.569233)
	fce (0.543183)
	ton (0.526501)
	fhi (0.508733)
	ese (0.506009)
	ebs (0.473205)
	ecc (0.46014)
	cli (0.458435)
	eli (0.455443)
	amn (0.417711)
	nca (0.410621)
	che (0.408942)
	fli (0.405762)
	nbm (0.397298)
	fcc (0.39557)
	nep (0.36785)
	cly (0.361925)
	jej (0.296765)
	cga (0.279096)
	nmm (0.265604)
	ute (0.265569)
	jca (0.22792)
	mas (0.210305)
	nlu (0.191681)
	fbs (0.175346)
	duo (0.172801)
	cje (0.165235)
	nco (0.161734)
	hyp (0.142837)
	pty (0.142714)
	pgl (0.118483)