Non-Coding RNA Search

Ss1.1-rmed27c_j4.5

Sequence:


               
               CCCTCCTCCCAAATCCCACCCCCCCCATCGGCTTCTCCCCTCCAGGGGATGGAGGCTGAG
AGACCCCAGGAAGAAGAGAATGGTGAGCAGCATCAGGACCCCGATCAGGATGAGCATGGC
TGGCCCCCTGTGAACACCAGCACTCGGCCTTGGCGATCTGCTCCTCCGTCCCCTCCTCCT
TCAGGGACCCGCCACACAGACTGAGCTGCTCCTGGACCTGGTGGCTGAAGCCCAGTCCCG
CCGCCTAGAAGAACAGAGGGCCACCTTCCATGCCCCCCAGAAGCTCCCAAGCCTAGGCCG
AGTCCCACCCCGGCCTCTTGAGGACAGAGAACAGCTCTACAGCACTATCCTCAGTCACCA
GTGCCAGCGGATGGAAGCCCAGCGGTCAGAGCCTCCCCTACCCCCAGGGGGGCAGGAGCT
CCTGGAGTTGCTGCTGAGAGTTCAGGGTGGAGGTCGAATGGAGGAGCAAAGGTCCCAGCC
CCCCACACACACCTGCTAAGACTTGAGCTCCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCCTCCCAAATCCCACCCCCCCCATCGGCTTCTCCCCTCCAGGGGATGGAGGCTGAG
AGACCCCAGGAAGAAGAGAATGGTGAGCAGCATCAGGACCCCGATCAGGATGAGCATGGC
TGGCCCCCTGTGAACACCAGCACTCGGCCTTGGCGATCTGCTCCTCCGTCCCCTCCTCCT
TCAGGGACCCGCCACACAGACTGAGCTGCTCCTGGACCTGGTGGCTGAAGCCCAGTCCCG
CCGCCTAGAAGAACAGAGGGCCACCTTCCATGCCCCCCAGAAGCTCCCAAGCCTAGGCCG
AGTCCCACCCCGGCCTCTTGAGGACAGAGAACAGCTCTACAGCACTATCCTCAGTCACCA
GTGCCAGCGGATGGAAGCCCAGCGGTCAGAGCCTCCCCTACCCCCAGGGGGGCAGGAGCT
CCTGGAGTTGCTGCTGAGAGTTCAGGGTGGAGGTCGAATGGAGGAGCAAAGGTCCCAGCC
CCCCACACACACCTGCTAAGACTTGAGCTCCCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857364|ref|XP_594391.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857364|ref|XP_594391.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               88-199, gnl|bosTau2|chr23 (23678818-23678929)
               

               
               88-199, gnl|Hg17|chr6 (32268014-32267903)
               

               
               88-199, gnl|Mm7|chr17 (32671785-32671896)
               


               
               358-516, gnl|bosTau2|chr23 (23679807-23679966)
               

               
               358-516, gnl|Hg17|chr6 (32267262-32267104)
               

               
               358-516, gnl|Mm7|chr17 (32672499-32672658)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-199, gnl|bosTau2|chr23 (23678818-23678929)
               

               
               88-199, gnl|Hg17|chr6 (32268014-32267903)
               

               
               88-199, gnl|Mm7|chr17 (32671785-32671896)
               


               
               358-516, gnl|bosTau2|chr23 (23679807-23679966)
               

               
               358-516, gnl|Hg17|chr6 (32267262-32267104)
               

               
               358-516, gnl|Mm7|chr17 (32672499-32672658)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)
               

               
               cty (0.10408)

	88-199, gnl\|bosTau2\|chr23 (23678818-23678929)
	88-199, gnl\|Hg17\|chr6 (32268014-32267903)
	88-199, gnl\|Mm7\|chr17 (32671785-32671896)

	358-516, gnl\|bosTau2\|chr23 (23679807-23679966)
	358-516, gnl\|Hg17\|chr6 (32267262-32267104)
	358-516, gnl\|Mm7\|chr17 (32672499-32672658)