Ss1.1-rmed27c_k18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCCTGCATACTCTGCTAAATGGAGAAAATACCTTCACCTGAAAATGTGTTTCTACACA GCCTACGCGTATTGTTATCACGGTCAGACTTTGTTGGCTAGTGATAAATGTGGTGAAGCA ATCAGGTCTCTCCAGGAAGCAGAAAAATTTTATGCAAAGGCAGAAGCATTATGCAAAGAG TATGGAGAGACGAAAGGACCCGGACCAACAGTCAAACCTTCAGGACACTTGTTCTTTAGG AAGCTTGGAACTCTTGTGAAGAACACCCTCGAAAAATGTCAGCGAGAAAATGGATTTATT TACTTTCAGAAAGTTCCAACAGAAGCCCCACAACTGGAACTCAAAGCTAATTATGGTCTC GTCGAGCCTGTACCTTTTGAATTTCCTCCTCTGAGCTCGCACTGGACCCCAGAGGCGATG GCTGCGTTTGACCTCACCCAGAGGCCCAAGGATGACAGGGGCAAACCCAAGCCGGAAGAA GTGGTGAAGCCGGTGAAAGAACCAGATATCAAACCTCAGAAGGACACTGGATGTTCCGTC TCCTAAGATGTGGTGACGTGGCAGCGCTTTGACTTCCCCTGTGGCAGATGAGATCGGCCG CAGACCTTCAGTTCGTATTCCTAAAATGATTTCTCTGAAGCCTGTAGGTTTAATGTAGTC ATTCAGAGGGAATCTGCCTTCAGTTTATTCTTGATTTGTCATGCAGTGGAGATGTTTCAT GCTTTGCTTTGAGACTCCTTCCTAAGTAGGACAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCCTGCATACTCTGCTAAATGGAGAAAATACCTTCACCTGAAAATGTGTTTCTACACA GCCTACGCGTATTGTTATCACGGTCAGACTTTGTTGGCTAGTGATAAATGTGGTGAAGCA ATCAGGTCTCTCCAGGAAGCAGAAAAATTTTATGCAAAGGCAGAAGCATTATGCAAAGAG TATGGAGAGACGAAAGGACCCGGACCAACAGTCAAACCTTCAGGACACTTGTTCTTTAGG AAGCTTGGAACTCTTGTGAAGAACACCCTCGAAAAATGTCAGCGAGAAAATGGATTTATT TACTTTCAGAAAGTTCCAACAGAAGCCCCACAACTGGAACTCAAAGCTAATTATGGTCTC GTCGAGCCTGTACCTTTTGAATTTCCTCCTCTGAGCTCGCACTGGACCCCAGAGGCGATG GCTGCGTTTGACCTCACCCAGAGGCCCAAGGATGACAGGGGCAAACCCAAGCCGGAAGAA GTGGTGAAGCCGGTGAAAGAACCAGATATCAAACCTCAGAAGGACACTGGATGTTCCGTC TCCTAAGATGTGGTGACGTGGCAGCGCTTTGACTTCCCCTGTGGCAGATGAGATCGGCCG CAGACCTTCAGTTCGTATTCCTAAAATGATTTCTCTGAAGCCTGTAGGTTTAATGTAGTC ATTCAGAGGGAATCTGCCTTCAGTTTATTCTTGATTTGTCATGCAGTGGAGATGTTTCAT GCTTTGCTTTGAGACTCCTTCCTAAGTAGGACAACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 149-299, gnl|bosTau2|chr16 (17993408-17993258) | |
| 149-299, gnl|canFam2|chr38 (19987038-19987220) | |
| 149-299, gnl|canFam2|chr38 (19987220-19987038) | |
| 149-299, gnl|danRer3|chr20 (55107163-55106998) | |
| 149-299, gnl|danRer3|chr20 (55106998-55107163) | |
| 149-299, gnl|dasNov1|scaffold_66504 (8060-7933) | |
| 149-299, gnl|dasNov1|scaffold_66504 (7933-8060) | |
| 149-299, gnl|echTel1|scaffold_285676 (94606-94424) | |
| 149-299, gnl|echTel1|scaffold_285676 (94424-94613) | |
| 149-299, gnl|fr1|chrUn (148348717-148348887) | |
| 149-299, gnl|fr1|chrUn (148348887-148348717) | |
| 149-299, gnl|galGal2|chr3 (14332450-14332261) | |
| 149-299, gnl|galGal2|chr3 (14332274-14332450) | |
| 149-299, gnl|hg17|chr1 (219291746-219291928) | |
| 149-299, gnl|Hg17|chr1 (219291764-219291914) | |
| 149-299, gnl|hg17|chr1_random (1598322-1598504) | |
| 149-299, gnl|loxAfr1|scaffold_18058 (19629-19810) | |
| 149-299, gnl|loxAfr1|scaffold_18058 (19811-19629) | |
| 149-299, gnl|mm7|chrUn_random (1334344-1334173) | |
| 149-299, gnl|mm7|chrUn_random (1334172-1334339) | |
| 149-299, gnl|Mm7|chrUn_random (1334327-1334177) | |
| 149-299, gnl|monDom2|scaffold_13 (29508578-29508760) | |
| 149-299, gnl|monDom2|scaffold_13 (29508760-29508578) | |
| 149-299, gnl|oryCun1|scaffold_195264 (11908-12090) | |
| 149-299, gnl|oryCun1|scaffold_195264 (12090-11908) | |
| 149-299, gnl|panTro1|chr1 (203149593-203149774) | |
| 149-299, gnl|panTro1|chr1 (203149774-203149593) | |
| 149-299, gnl|rheMac2|chr1 (147541060-147540878) | |
| 149-299, gnl|rheMac2|chr1 (147540878-147541060) | |
| 149-299, gnl|rn3|chr13 (99512901-99512730) | |
| 149-299, gnl|rn3|chr13 (99512729-99512896) | |
| 149-299, gnl|tetNig1|chr14 (1156350-1156522) | |
| 149-299, gnl|tetNig1|chr14 (1156522-1156352) | |
| 149-299, gnl|xenTro1|scaffold_759 (178595-178415) | |
| 149-299, gnl|xenTro1|scaffold_759 (178415-178595) | |
| 300-458, gnl|bosTau2|chr16 (17991859-17991701) | |
| 300-458, gnl|canFam2|chr38 (19988231-19988357) | |
| 300-458, gnl|danRer3|chr20 (55104164-55104051) | |
| 300-458, gnl|dasNov1|scaffold_66504 (7932-7834) | |
| 300-458, gnl|echTel1|scaffold_249686 (2934-2838) | |
| 300-458, gnl|fr1|chrUn (148349220-148349330) | |
| 300-458, gnl|galGal2|chr3 (14330805-14330671) | |
| 300-458, gnl|hg17|chr1 (219293068-219293194) | |
| 300-458, gnl|Hg17|chr1 (219293094-219293252) | |
| 300-458, gnl|mm7|chrUn_random (1333034-1332908) | |
| 300-458, gnl|Mm7|chrUn_random (1333006-1332848) | |
| 300-458, gnl|monDom2|scaffold_13 (29509942-29510068) | |
| 300-458, gnl|oryCun1|scaffold_195264 (12886-13012) | |
| 300-458, gnl|panTro1|chr1 (203150917-203151043) | |
| 300-458, gnl|rheMac2|chr1 (147539735-147539609) | |
| 300-458, gnl|rn3|chr13 (99511571-99511445) | |
| 300-458, gnl|tetNig1|chr14 (1156726-1156834) | |
| 300-458, gnl|xenTro1|scaffold_759 (177996-177870) | |
| 463-755, gnl|bosTau2|chr16 (17990479-17990189) | |
| 463-755, gnl|Hg17|chr1 (219294368-219294661) | |
| 463-755, gnl|Mm7|chrUn_random (1331812-1331526) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-299, gnl|bosTau2|chr16 (17993408-17993258) | |
| 149-299, gnl|canFam2|chr38 (19987038-19987220) | |
| 149-299, gnl|canFam2|chr38 (19987220-19987038) | |
| 149-299, gnl|danRer3|chr20 (55107163-55106998) | |
| 149-299, gnl|danRer3|chr20 (55106998-55107163) | |
| 149-299, gnl|dasNov1|scaffold_66504 (8060-7933) | |
| 149-299, gnl|dasNov1|scaffold_66504 (7933-8060) | |
| 149-299, gnl|echTel1|scaffold_285676 (94606-94424) | |
| 149-299, gnl|echTel1|scaffold_285676 (94424-94613) | |
| 149-299, gnl|fr1|chrUn (148348717-148348887) | |
| 149-299, gnl|fr1|chrUn (148348887-148348717) | |
| 149-299, gnl|galGal2|chr3 (14332450-14332261) | |
| 149-299, gnl|galGal2|chr3 (14332274-14332450) | |
| 149-299, gnl|hg17|chr1 (219291746-219291928) | |
| 149-299, gnl|Hg17|chr1 (219291764-219291914) | |
| 149-299, gnl|hg17|chr1_random (1598322-1598504) | |
| 149-299, gnl|loxAfr1|scaffold_18058 (19629-19810) | |
| 149-299, gnl|loxAfr1|scaffold_18058 (19811-19629) | |
| 149-299, gnl|mm7|chrUn_random (1334344-1334173) | |
| 149-299, gnl|mm7|chrUn_random (1334172-1334339) | |
| 149-299, gnl|Mm7|chrUn_random (1334327-1334177) | |
| 149-299, gnl|monDom2|scaffold_13 (29508578-29508760) | |
| 149-299, gnl|monDom2|scaffold_13 (29508760-29508578) | |
| 149-299, gnl|oryCun1|scaffold_195264 (11908-12090) | |
| 149-299, gnl|oryCun1|scaffold_195264 (12090-11908) | |
| 149-299, gnl|panTro1|chr1 (203149593-203149774) | |
| 149-299, gnl|panTro1|chr1 (203149774-203149593) | |
| 149-299, gnl|rheMac2|chr1 (147541060-147540878) | |
| 149-299, gnl|rheMac2|chr1 (147540878-147541060) | |
| 149-299, gnl|rn3|chr13 (99512901-99512730) | |
| 149-299, gnl|rn3|chr13 (99512729-99512896) | |
| 149-299, gnl|tetNig1|chr14 (1156350-1156522) | |
| 149-299, gnl|tetNig1|chr14 (1156522-1156352) | |
| 149-299, gnl|xenTro1|scaffold_759 (178595-178415) | |
| 149-299, gnl|xenTro1|scaffold_759 (178415-178595) | |
| 300-458, gnl|bosTau2|chr16 (17991859-17991701) | |
| 300-458, gnl|canFam2|chr38 (19988231-19988357) | |
| 300-458, gnl|danRer3|chr20 (55104164-55104051) | |
| 300-458, gnl|dasNov1|scaffold_66504 (7932-7834) | |
| 300-458, gnl|echTel1|scaffold_249686 (2934-2838) | |
| 300-458, gnl|fr1|chrUn (148349220-148349330) | |
| 300-458, gnl|galGal2|chr3 (14330805-14330671) | |
| 300-458, gnl|hg17|chr1 (219293068-219293194) | |
| 300-458, gnl|Hg17|chr1 (219293094-219293252) | |
| 300-458, gnl|mm7|chrUn_random (1333034-1332908) | |
| 300-458, gnl|Mm7|chrUn_random (1333006-1332848) | |
| 300-458, gnl|monDom2|scaffold_13 (29509942-29510068) | |
| 300-458, gnl|oryCun1|scaffold_195264 (12886-13012) | |
| 300-458, gnl|panTro1|chr1 (203150917-203151043) | |
| 300-458, gnl|rheMac2|chr1 (147539735-147539609) | |
| 300-458, gnl|rn3|chr13 (99511571-99511445) | |
| 300-458, gnl|tetNig1|chr14 (1156726-1156834) | |
| 300-458, gnl|xenTro1|scaffold_759 (177996-177870) | |
| 463-755, gnl|bosTau2|chr16 (17990479-17990189) | |
| 463-755, gnl|Hg17|chr1 (219294368-219294661) | |
| 463-755, gnl|Mm7|chrUn_random (1331812-1331526) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sme (0.305437) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| med (0.116252) |