Non-Coding RNA Search

Ss1.1-rmed28c_k21.5

Sequence:


               
               TTTTTTTTTTTTTATTAAACTAGCAGCTTTATTGCCCTTCAGGCCCCCTCTTCACTTGAG
GAGATGTCTAAGTGCTTGAGGGAGGAAAACCTGTAAGAAATGATGGAGATCAGGGAACAG
GCCGTGAGGATCCTGGAGCGGGGTCACAGTGAGAGTCTGGTGGGCCTCTGAGGCCGAGGC
CACGAAGGTCAGGAGCGGCTCAGCCTCTGGCCTCTGTTCAGTACCGCTCGGTCCTCTCAG
CTCCCGGGTTACCCGAGCCTCAGTGGCCAGCCATTCTGCTCCTGTGCCAGCACCAGCTCC
ACCTCCTTCCTTGGTTTGCTGCTGCAAGCGTCTTCGGGCACGCCGCCTCCCCTGCCACAC
TCGGTGCCACAAGGCACAGCGCCAGCTCGCTGAGGAGGGCGCCACCTCCTTCCCTGCCTC
GCCCTGAGACCCTTCTCCAGCTGCCTCCGGTCCTTTGGGCCCCTGCTCTGCCGGCGCCAC
CGTCTGCACCTCTTCCCCAGGGGCCAGATGCTTTCCGGTCGTCCGGGGAAGCTCCGCCGG
CTGCCCTGGGCTCCGCATGGCCCAGTCCTGCACCGACTCTCCAACCTCTACGACCATTTC
TTGTACCCCGTCTTCACTGTGATCCCCCGCACAGCCCTGCTGCTCCTCCTGCCCCGCTGC
ACAGCGTTTTCTCTGCCCATCTACTTTCAGTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTATTAAACTAGCAGCTTTATTGCCCTTCAGGCCCCCTCTTCACTTGAG
GAGATGTCTAAGTGCTTGAGGGAGGAAAACCTGTAAGAAATGATGGAGATCAGGGAACAG
GCCGTGAGGATCCTGGAGCGGGGTCACAGTGAGAGTCTGGTGGGCCTCTGAGGCCGAGGC
CACGAAGGTCAGGAGCGGCTCAGCCTCTGGCCTCTGTTCAGTACCGCTCGGTCCTCTCAG
CTCCCGGGTTACCCGAGCCTCAGTGGCCAGCCATTCTGCTCCTGTGCCAGCACCAGCTCC
ACCTCCTTCCTTGGTTTGCTGCTGCAAGCGTCTTCGGGCACGCCGCCTCCCCTGCCACAC
TCGGTGCCACAAGGCACAGCGCCAGCTCGCTGAGGAGGGCGCCACCTCCTTCCCTGCCTC
GCCCTGAGACCCTTCTCCAGCTGCCTCCGGTCCTTTGGGCCCCTGCTCTGCCGGCGCCAC
CGTCTGCACCTCTTCCCCAGGGGCCAGATGCTTTCCGGTCGTCCGGGGAAGCTCCGCCGG
CTGCCCTGGGCTCCGCATGGCCCAGTCCTGCACCGACTCTCCAACCTCTACGACCATTTC
TTGTACCCCGTCTTCACTGTGATCCCCCGCACAGCCCTGCTGCTCCTCCTGCCCCGCTGC
ACAGCGTTTTCTCTGCCCATCTACTTTCAGTCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               483-594, + strand, RNAz p=0.870723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-594, + strand, RNAz p=0.870723

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK125351, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK125351, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-696, gnl|bosTau2|chr29 (32032776-32033466)
               

               
               11-696, gnl|Hg17|chr11 (62099098-62099792)
               

               
               11-696, gnl|Mm7|chr19 (8646364-8645696)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-696, gnl|bosTau2|chr29 (32032776-32033466)
               

               
               11-696, gnl|Hg17|chr11 (62099098-62099792)
               

               
               11-696, gnl|Mm7|chr19 (8646364-8645696)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.285673)
               

               
               nms (0.213858)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               nms (0.213858)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	11-696, gnl\|bosTau2\|chr29 (32032776-32033466)
	11-696, gnl\|Hg17\|chr11 (62099098-62099792)
	11-696, gnl\|Mm7\|chr19 (8646364-8645696)

	hyp (0.285673)
	nms (0.213858)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)