Non-Coding RNA Search

Ss1.1-rmed29c_e13.5

Sequence:


               
               TCTTTAGGTGAGAAGTGCCGACTATACCCCGAGGGGGGTGGGGCGGATAGCTGGGGGGTG
AAGGGACAGTTGTTAGGTCAGCGAAAGCTCAAATCTCCCCTGGTTGGTGGGGGGGGGGGG
CAGGGAGGCAGGCCTGCTAATTTGGGGAGGGAGGTTTTCATCAAAAGAAGTGGCACTTTA
CCCCCCTGGCTCCGTCCCCCAATCCCTGGGACTCCCCTTGTGCCCGGGCAGCAGGACCGA
GTGTCGTTGGGAAGGGGAGCGCTAAGGGGCACGGAGACCACGTGGAGTCCGGGGGAGGAA
AGGCAGGATATTACCCTGATTCAAAGCCCCCAGCCCCCAGTCACTCTCCAGTATCAGAGG
ACTGTCCTGGTTTGTGTTAAGCGGCCCCAGAAAGGGACCAAAGTTGGTGAGGTGAGAGGG
TGCAAACAAGGGCTGGGAGCGCCCCTCTGATACTGCCTCATCTGAGTACTGCTCCTGTCC
CTGCCCTCAGCTGTCCAGGGTCCAGGGGGAGGGAGACAGACACACAGACACACAGACAGA
CAGACAGACAGACACGCGCGCACACACACACACACACACACACACACACACACACACACA
CGCACACACGCACACGCATACACGCTCTCTGAGTCAGGCAGCTCCATCTCCCCCCTCGGC
ACTCCTAAATCCAATAGTGCAAACAAGGGACAGGGCACCAAGGGGGCTGGGCCGCCCTCC
CCCGGCCCATCACTGGGGCCCACCCCCCAGAGGGAGGGAGGCTTGGGCCGAATCTGATGC
CATCCCGCCCCTTCCTCAGCGCCCTGGCCTGCGGGCTTTTACAAGCTCAGCTTGTGACCC
TTGGAGGGGTCAGGGGAAGGGGCCCAGCGACAAATAGTCTAAGGGAGCCCACTCGCCATC
TGCCCACGTCGGGAAGAAACTGCAGGTCAGGTAGGGCCACCCCCCTTCTTCCATAAAAGA
CTTCTGTGCAGGGGCAGGCCCAGGGCCTAGCCCCCCACGTCTCCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTAGGTGAGAAGTGCCGACTATACCCCGAGGGGGGTGGGGCGGATAGCTGGGGGGTG
AAGGGACAGTTGTTAGGTCAGCGAAAGCTCAAATCTCCCCTGGTTGGTGGGGGGGGGGGG
CAGGGAGGCAGGCCTGCTAATTTGGGGAGGGAGGTTTTCATCAAAAGAAGTGGCACTTTA
CCCCCCTGGCTCCGTCCCCCAATCCCTGGGACTCCCCTTGTGCCCGGGCAGCAGGACCGA
GTGTCGTTGGGAAGGGGAGCGCTAAGGGGCACGGAGACCACGTGGAGTCCGGGGGAGGAA
AGGCAGGATATTACCCTGATTCAAAGCCCCCAGCCCCCAGTCACTCTCCAGTATCAGAGG
ACTGTCCTGGTTTGTGTTAAGCGGCCCCAGAAAGGGACCAAAGTTGGTGAGGTGAGAGGG
TGCAAACAAGGGCTGGGAGCGCCCCTCTGATACTGCCTCATCTGAGTACTGCTCCTGTCC
CTGCCCTCAGCTGTCCAGGGTCCAGGGGGAGGGAGACAGACACACAGACACACAGACAGA
CAGACAGACAGACACGCGCGCACACACACACACACACACACACACACACACACACACACA
CGCACACACGCACACGCATACACGCTCTCTGAGTCAGGCAGCTCCATCTCCCCCCTCGGC
ACTCCTAAATCCAATAGTGCAAACAAGGGACAGGGCACCAAGGGGGCTGGGCCGCCCTCC
CCCGGCCCATCACTGGGGCCCACCCCCCAGAGGGAGGGAGGCTTGGGCCGAATCTGATGC
CATCCCGCCCCTTCCTCAGCGCCCTGGCCTGCGGGCTTTTACAAGCTCAGCTTGTGACCC
TTGGAGGGGTCAGGGGAAGGGGCCCAGCGACAAATAGTCTAAGGGAGCCCACTCGCCATC
TGCCCACGTCGGGAAGAAACTGCAGGTCAGGTAGGGCCACCCCCCTTCTTCCATAAAAGA
CTTCTGTGCAGGGGCAGGCCCAGGGCCTAGCCCCCCACGTCTCCCACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               195-406, - strand, RNAz p=0.999669
               

               
               619-1008, - strand, RNAz p=0.996895

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-406, - strand, RNAz p=0.999669
               

               
               619-1008, - strand, RNAz p=0.996895

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               185-302, + strand, RNAmicro p=0.929638
               

               
               187-290, - strand, RNAmicro p=0.914203

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               185-302, + strand, RNAmicro p=0.929638
               

               
               187-290, - strand, RNAmicro p=0.914203

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of AB209633, -
               

               
               3' of AB209633, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209633, -
               

               
               3' of AB209633, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               47-1008, gnl|bosTau2|chr19 (31563481-31562512)
               

               
               47-1008, gnl|Hg17|chr17 (34136663-34135745)
               

               
               47-1008, gnl|Mm7|chr11 (97791868-97790970)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-1008, gnl|bosTau2|chr19 (31563481-31562512)
               

               
               47-1008, gnl|Hg17|chr17 (34136663-34135745)
               

               
               47-1008, gnl|Mm7|chr11 (97791868-97790970)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbr (0.127975)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)
               

               
               med (0.116252)

	195-406, - strand, RNAz p=0.999669
	619-1008, - strand, RNAz p=0.996895

	185-302, + strand, RNAmicro p=0.929638
	187-290, - strand, RNAmicro p=0.914203

	47-1008, gnl\|bosTau2\|chr19 (31563481-31562512)
	47-1008, gnl\|Hg17\|chr17 (34136663-34135745)
	47-1008, gnl\|Mm7\|chr11 (97791868-97790970)