Ss1.1-rmed29c_k11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCTCAGTCTGCACAAACTCCAGTAGCAGTTATTGGTCTTACATGTAGATTGGATATT TTGGAACTCTTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGGCAGATACACTTAATG AATTCATTTGGTTTTCCACAGTATCTTAAAATATTTAAAGAACAATTATCTCTACCTGCA GTATTTCCAGACAAGATTTTCGCTGAGAAGTGGAATGAGAATGTTCAGACTCTCTCAGAA GATAGGAGTGTGCGAGAAGTGCTGCAGAAGCATTTCAATGTTACCAAAAACCTGCGGTCT TTACACATGCTGTTGATGCTTGCTTTAAATCGTGTAACACCATCACACCCTTTTATGACT GCAACAGATCTGATGGAGGCAAACCAGCTGTGTAGCATGGACTCTAAAGCAAATATTGTA CATGGTCTGTCAGTCTTGGAAATCTGTCTTATCATAGCGATGAAACATTTAAATGACATC TATGAAGAGGAGCCCTTTAATTTTCAAATGGTTTATAATGAGTTTCAGAAGTTTGTTCAA AGGAAGGCCCATTCTGTTTACAATTTTGAGAAACCTGTTGTCATGAAGGCTTTTGAACAC TTACAACAATTAGAATTAATAAGGCCCATTGAAAGAACGACAGTAAATGCACAGAGGGAG TACCAGCTGATGAAACTGCTTTTGGACAATACTCAAATTATGAATGCTTTACAGAAATAT CCTAACTGTCCTACAGATGTTAGGCAATGGGCAACATCCTCACTAAGCTGGTTATGAATA TCACCATGGCTTCGGTTATGGAATTCCTGGCTTACTAAAAGCTAACTAAAAGCTATTGTC CTTTAACAAGATATGTTATTACATTTTTGTTACATTTATAAAGAAGTATTTTTATATTAA TGGGAAACTGTTACACATGTAGTAGCATAGCTTGCCTTGCCTTTAAATCATGAGCAGTTA CATGATTTATAATTCCAGTGATTTAGATTATAAGTAGCTGTTCAAAAAAAAAAAAATAAA TGTGACTATTTTAGGCATTGAACCATATGCTTATTTAACACTTGTGAAGTATGTATATGG TACATTTGAAAAGTTCAACTCATTTAGCAGCTGGATTTTTTACATACCTTAAACAAAGCA GTAAAAGAGCAATGGTAAGAGTTGAGGTGTTGAGTAATCTTTTGGCCCACTGGGAGGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCTCAGTCTGCACAAACTCCAGTAGCAGTTATTGGTCTTACATGTAGATTGGATATT TTGGAACTCTTAGAAAAAAGAGTGAAGTCACGATTTTCTCACCGGCAGATACACTTAATG AATTCATTTGGTTTTCCACAGTATCTTAAAATATTTAAAGAACAATTATCTCTACCTGCA GTATTTCCAGACAAGATTTTCGCTGAGAAGTGGAATGAGAATGTTCAGACTCTCTCAGAA GATAGGAGTGTGCGAGAAGTGCTGCAGAAGCATTTCAATGTTACCAAAAACCTGCGGTCT TTACACATGCTGTTGATGCTTGCTTTAAATCGTGTAACACCATCACACCCTTTTATGACT GCAACAGATCTGATGGAGGCAAACCAGCTGTGTAGCATGGACTCTAAAGCAAATATTGTA CATGGTCTGTCAGTCTTGGAAATCTGTCTTATCATAGCGATGAAACATTTAAATGACATC TATGAAGAGGAGCCCTTTAATTTTCAAATGGTTTATAATGAGTTTCAGAAGTTTGTTCAA AGGAAGGCCCATTCTGTTTACAATTTTGAGAAACCTGTTGTCATGAAGGCTTTTGAACAC TTACAACAATTAGAATTAATAAGGCCCATTGAAAGAACGACAGTAAATGCACAGAGGGAG TACCAGCTGATGAAACTGCTTTTGGACAATACTCAAATTATGAATGCTTTACAGAAATAT CCTAACTGTCCTACAGATGTTAGGCAATGGGCAACATCCTCACTAAGCTGGTTATGAATA TCACCATGGCTTCGGTTATGGAATTCCTGGCTTACTAAAAGCTAACTAAAAGCTATTGTC CTTTAACAAGATATGTTATTACATTTTTGTTACATTTATAAAGAAGTATTTTTATATTAA TGGGAAACTGTTACACATGTAGTAGCATAGCTTGCCTTGCCTTTAAATCATGAGCAGTTA CATGATTTATAATTCCAGTGATTTAGATTATAAGTAGCTGTTCAAAAAAAAAAAAATAAA TGTGACTATTTTAGGCATTGAACCATATGCTTATTTAACACTTGTGAAGTATGTATATGG TACATTTGAAAAGTTCAACTCATTTAGCAGCTGGATTTTTTACATACCTTAAACAAAGCA GTAAAAGAGCAATGGTAAGAGTTGAGGTGTTGAGTAATCTTTTGGCCCACTGGGAGGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 93-212, + strand, RNAz p=0.54818 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 93-212, + strand, RNAz p=0.54818 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 54-228, gnl|bosTau2|chr2 (31769481-31769655) | |
| 54-228, gnl|canFam2|chr19 (52771207-52771408) | |
| 54-228, gnl|danRer3|chr15 (17295061-17294883) | |
| 54-228, gnl|dasNov1|scaffold_21038 (2320-2521) | |
| 54-228, gnl|echTel1|scaffold_281887 (33528-33328) | |
| 54-228, gnl|galGal2|chr7 (35225183-35225372) | |
| 54-228, gnl|hg17|chr2 (148539336-148539533) | |
| 54-228, gnl|Hg17|chr2 (148539526-148539352) | |
| 54-228, gnl|loxAfr1|scaffold_74148 (3658-3859) | |
| 54-228, gnl|mm7|chr2 (48924464-48924657) | |
| 54-228, gnl|Mm7|chr2 (48924650-48924476) | |
| 54-228, gnl|monDom2|scaffold_2 (38095060-38095261) | |
| 54-228, gnl|panTro1|chr13 (37584330-37584527) | |
| 54-228, gnl|rheMac2|chr12 (11494613-11494809) | |
| 54-228, gnl|rn3|chr3 (29722325-29722518) | |
| 54-228, gnl|xenTro1|scaffold_216 (83757-83560) | |
| 315-426, gnl|bosTau2|chr2 (31784932-31785043) | |
| 315-426, gnl|canFam2|chr19 (52755938-52756075) | |
| 315-426, gnl|dasNov1|scaffold_17105 (66650-66785) | |
| 315-426, gnl|echTel1|scaffold_281887 (42472-42335) | |
| 315-426, gnl|fr1|chrUn (18078078-18078215) | |
| 315-426, gnl|galGal2|chr7 (35223015-35223148) | |
| 315-426, gnl|hg17|chr2 (148530434-148530571) | |
| 315-426, gnl|Hg17|chr2 (148530550-148530439) | |
| 315-426, gnl|loxAfr1|scaffold_34021 (19103-19240) | |
| 315-426, gnl|mm7|chr2 (48917490-48917627) | |
| 315-426, gnl|Mm7|chr2 (48917606-48917495) | |
| 315-426, gnl|monDom2|scaffold_2 (38070518-38070662) | |
| 315-426, gnl|oryCun1|scaffold_110720 (840-703) | |
| 315-426, gnl|panTro1|chr13 (37574925-37575062) | |
| 315-426, gnl|rheMac2|chr12 (11485478-11485615) | |
| 315-426, gnl|rn3|chr3 (29714051-29714188) | |
| 315-426, gnl|xenTro1|scaffold_216 (84987-84850) | |
| 587-1197, gnl|bosTau2|chr2 (31788676-31789287) | |
| 587-1197, gnl|Hg17|chr2 (148527001-148526404) | |
| 587-1197, gnl|Mm7|chr2 (48912912-48912348) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-228, gnl|bosTau2|chr2 (31769481-31769655) | |
| 54-228, gnl|canFam2|chr19 (52771207-52771408) | |
| 54-228, gnl|danRer3|chr15 (17295061-17294883) | |
| 54-228, gnl|dasNov1|scaffold_21038 (2320-2521) | |
| 54-228, gnl|echTel1|scaffold_281887 (33528-33328) | |
| 54-228, gnl|galGal2|chr7 (35225183-35225372) | |
| 54-228, gnl|hg17|chr2 (148539336-148539533) | |
| 54-228, gnl|Hg17|chr2 (148539526-148539352) | |
| 54-228, gnl|loxAfr1|scaffold_74148 (3658-3859) | |
| 54-228, gnl|mm7|chr2 (48924464-48924657) | |
| 54-228, gnl|Mm7|chr2 (48924650-48924476) | |
| 54-228, gnl|monDom2|scaffold_2 (38095060-38095261) | |
| 54-228, gnl|panTro1|chr13 (37584330-37584527) | |
| 54-228, gnl|rheMac2|chr12 (11494613-11494809) | |
| 54-228, gnl|rn3|chr3 (29722325-29722518) | |
| 54-228, gnl|xenTro1|scaffold_216 (83757-83560) | |
| 315-426, gnl|bosTau2|chr2 (31784932-31785043) | |
| 315-426, gnl|canFam2|chr19 (52755938-52756075) | |
| 315-426, gnl|dasNov1|scaffold_17105 (66650-66785) | |
| 315-426, gnl|echTel1|scaffold_281887 (42472-42335) | |
| 315-426, gnl|fr1|chrUn (18078078-18078215) | |
| 315-426, gnl|galGal2|chr7 (35223015-35223148) | |
| 315-426, gnl|hg17|chr2 (148530434-148530571) | |
| 315-426, gnl|Hg17|chr2 (148530550-148530439) | |
| 315-426, gnl|loxAfr1|scaffold_34021 (19103-19240) | |
| 315-426, gnl|mm7|chr2 (48917490-48917627) | |
| 315-426, gnl|Mm7|chr2 (48917606-48917495) | |
| 315-426, gnl|monDom2|scaffold_2 (38070518-38070662) | |
| 315-426, gnl|oryCun1|scaffold_110720 (840-703) | |
| 315-426, gnl|panTro1|chr13 (37574925-37575062) | |
| 315-426, gnl|rheMac2|chr12 (11485478-11485615) | |
| 315-426, gnl|rn3|chr3 (29714051-29714188) | |
| 315-426, gnl|xenTro1|scaffold_216 (84987-84850) | |
| 587-1197, gnl|bosTau2|chr2 (31788676-31789287) | |
| 587-1197, gnl|Hg17|chr2 (148527001-148526404) | |
| 587-1197, gnl|Mm7|chr2 (48912912-48912348) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tra (0.369276) | |
| lin (0.291206) | |
| thg (0.253582) | |
| med (0.232504) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.369276) | |
| lin (0.291206) | |
| thg (0.253582) | |
| med (0.232504) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| sto (0.179824) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |