Non-Coding RNA Search

Ss1.1-rmed29c_n23.5

Sequence:


               
               GCTCTCGGTGAAGCACCGGCAGGTGAAGCATTACCGCATCTTCCGTCTGCCAAACAACTG
GTACTACATCTCCCCGAGGCTCACCTTCCAGTGCCTGGAGGACCTGGTGAACCACTATTC
GGAGGTGGCTGACGGCCTCTGCTGTGTCCTGACCACACCCTGCCTCACTCAGACCACGGC
CACCCCGGCAGAAAGGGCCCCCGACTCGCCCGTCACCTTGCGCCAGAAGACCTTCGACTG
GAAGAGGGTATCCAGGCTCCGGGAGGACCCCGAGGGGGCAGGAAGCCCACTGGGCGTGGA
TGAGTCCCTTTTCAGCTATGGCCTCCGGGAAAGCATTGCCTCCTACCTGTCCCTGACCGG
CGAGGACAACACCTCCTTCGATCGGAAGAAGAAAAGCCTCTCTCTGATGTACAGCGGGAG
CAAAAGGAAGAGCTCTTTCTTCTCGTCACCACCATACTTTGAAGACTAGCCCAAGAACAG
ACACTGCGGCGTTTGCCCAAAATAACAGAGGTTTGAACTGTCACCTGGGATCTTGCACGC
TTTCCTGGTCCCTGGGAAGCCTCACCTCTTCCAAGAGCCAAGAGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTCGGTGAAGCACCGGCAGGTGAAGCATTACCGCATCTTCCGTCTGCCAAACAACTG
GTACTACATCTCCCCGAGGCTCACCTTCCAGTGCCTGGAGGACCTGGTGAACCACTATTC
GGAGGTGGCTGACGGCCTCTGCTGTGTCCTGACCACACCCTGCCTCACTCAGACCACGGC
CACCCCGGCAGAAAGGGCCCCCGACTCGCCCGTCACCTTGCGCCAGAAGACCTTCGACTG
GAAGAGGGTATCCAGGCTCCGGGAGGACCCCGAGGGGGCAGGAAGCCCACTGGGCGTGGA
TGAGTCCCTTTTCAGCTATGGCCTCCGGGAAAGCATTGCCTCCTACCTGTCCCTGACCGG
CGAGGACAACACCTCCTTCGATCGGAAGAAGAAAAGCCTCTCTCTGATGTACAGCGGGAG
CAAAAGGAAGAGCTCTTTCTTCTCGTCACCACCATACTTTGAAGACTAGCCCAAGAACAG
ACACTGCGGCGTTTGCCCAAAATAACAGAGGTTTGAACTGTCACCTGGGATCTTGCACGC
TTTCCTGGTCCCTGGGAAGCCTCACCTCTTCCAAGAGCCAAGAGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55631288|ref|XP_519969.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631288|ref|XP_519969.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.534169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.534169

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-120, gnl|bosTau2|chr14 (4610675-4610557)
               

               
               2-120, gnl|Hg17|chr8 (134126531-134126413)
               

               
               2-120, gnl|Mm7|chr15 (66870836-66870718)
               


               
               263-588, gnl|bosTau2|chr14 (4605446-4605119)
               

               
               263-588, gnl|Hg17|chr8 (134120157-134119826)
               

               
               263-588, gnl|Mm7|chr15 (66866427-66866106)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-120, gnl|bosTau2|chr14 (4610675-4610557)
               

               
               2-120, gnl|Hg17|chr8 (134126531-134126413)
               

               
               2-120, gnl|Mm7|chr15 (66870836-66870718)
               


               
               263-588, gnl|bosTau2|chr14 (4605446-4605119)
               

               
               263-588, gnl|Hg17|chr8 (134120157-134119826)
               

               
               263-588, gnl|Mm7|chr15 (66866427-66866106)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               med (0.116252)

	2-120, gnl\|bosTau2\|chr14 (4610675-4610557)
	2-120, gnl\|Hg17\|chr8 (134126531-134126413)
	2-120, gnl\|Mm7\|chr15 (66870836-66870718)

	263-588, gnl\|bosTau2\|chr14 (4605446-4605119)
	263-588, gnl\|Hg17\|chr8 (134120157-134119826)
	263-588, gnl\|Mm7\|chr15 (66866427-66866106)