Non-Coding RNA Search

Ss1.1-rmed31c_g1.5

Sequence:


               
               ATAATGTATTGCACCAGGTAAGGCGAAGATCAACCATCCATTATTTACCTTCCGTGGCAA
TTGATATGGTTGGGAGGGTGGAGAGTTTTTTTGCAGAAGGTGTAAAGTGATTGGACTTTT
TACTTAACCGTTCCAGGGACTTTTTTTACATTGATTTCCTGTGCATTTTTTCAGTTCCCA
TGAAACTGTCCTTGTTTACATACTTTCTCTGTTGTATCAATACTTCGATTCTAGTGGGAT
GACAGTTTACTTAAAACCTGAGAGGGCCGTTCAGCATTGCCTAATGTTTTTACTTCTCAA
ATCTGTGTAGTACACTGGCTTGTAATCTTTATGTCTTCATTGACTCTGAGTGTCTTTGCT
ATTTCTCTTTCTCCTCAAGGAAATATACTGTCTTCATGTACTCTTAAGAGAAAAGAGCAA
AAACGATTATCTTTCTAAGTCTCATTTTCTTTGAGTTGGAAACGAACAAACAAAAACATG
AAGGACTCCACCTAGGAGACAGACATTTAAATTTTACATAGACTGTTGGAAAAAGTTTAA
GAGTTTCCAAGTTATTAGCTTTTGTTTTTAGAAAAAGTTAAGAGACTGCTCCTTGTACTG
GAGATACTAGTATACGTTTGTAATGTTACCTTAACGTTATCTTTTATTCTGTAAGTCTCG
TACATACTAGTTAAATTCTTTAAAAAAATTGAGCTACTATCATGGATGGTTTCACTGCCA
TCAGCCATGTTGATGTATTATAAATGGCATCCTTATCTACTTATTTTAATGCTTAAAGTT
TTATATAAAATGCTTTATTTAGAAAATGTACAGAATACAGTGGTGTCAGCCTTGCCATGT
ACCGATTTCACTTGAAATTTGACACCAATCACAGTGGTTGGGGGTGGAGAAAGAGGTTCT
GGAAAACAAAAAGATAAGAATATCTTTTTCAGTTTGTAACAGTATCCTTTCTGTGGGAAG
AGAAGTTACTATTCCAGGAAGGCAGCTCCAGTGTATGTTTTGTGTATCATTGAGAATTTT
CTTTAAAACATTTTTTCAATGGTGTAATTGTTAAATGCCCAGTTTTGCTCTGCATTTGCC
TGAGGTTTCTAAAAACCAAACCAGTGCTTGGGGAGGTTAGATGTGTGTGTTTCCAGGTTG
GTGTGTATGAGTGGTTCTGCTTGCTTTTTGGCTGTGTTTTCCGCCAGAGGTTTGGAACCT
TAATCAATAATTTTGTGTGTTGTTGTTGTTGTTTTTAAGTGGCTTTGGTTTTTTTTCTCA
AGTTAAATTGTGAACACGTTTGCTTTTTAAGGGCAGGGCATCAGTTCTAGAGACTGAAAA
GTATTGTAGGTTGTATGATACACTTTCTTGATGTGTTTCTGGACACAGTTTTTTGTTATT
TTTTTCAACAACTTGAAAACTCAAAAGGGACATTTGATTAGGTTATATACTGTACATCCA
TGGCAGCTTGTTTTCTTGAGCCACTGTCTAAATTTTTTTTTCTGTTTTTATAGAAAATTT
TTATACTGATTGGTTCATAGATGATCGGTTTTATACACAGACTAAACAATACAGCACTTT
GCCAAAAAATAAGTGTAGCATTGCTTAAACATTGTGTATTAACACCAGTTCTTTGTAATT
GGGTTCAGCGGTGTATTTTGCACTACCTGGAGTTATGGTTTTTAATCTGTCAGTAAATAA
AATGTCCTTTAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAATGTATTGCACCAGGTAAGGCGAAGATCAACCATCCATTATTTACCTTCCGTGGCAA
TTGATATGGTTGGGAGGGTGGAGAGTTTTTTTGCAGAAGGTGTAAAGTGATTGGACTTTT
TACTTAACCGTTCCAGGGACTTTTTTTACATTGATTTCCTGTGCATTTTTTCAGTTCCCA
TGAAACTGTCCTTGTTTACATACTTTCTCTGTTGTATCAATACTTCGATTCTAGTGGGAT
GACAGTTTACTTAAAACCTGAGAGGGCCGTTCAGCATTGCCTAATGTTTTTACTTCTCAA
ATCTGTGTAGTACACTGGCTTGTAATCTTTATGTCTTCATTGACTCTGAGTGTCTTTGCT
ATTTCTCTTTCTCCTCAAGGAAATATACTGTCTTCATGTACTCTTAAGAGAAAAGAGCAA
AAACGATTATCTTTCTAAGTCTCATTTTCTTTGAGTTGGAAACGAACAAACAAAAACATG
AAGGACTCCACCTAGGAGACAGACATTTAAATTTTACATAGACTGTTGGAAAAAGTTTAA
GAGTTTCCAAGTTATTAGCTTTTGTTTTTAGAAAAAGTTAAGAGACTGCTCCTTGTACTG
GAGATACTAGTATACGTTTGTAATGTTACCTTAACGTTATCTTTTATTCTGTAAGTCTCG
TACATACTAGTTAAATTCTTTAAAAAAATTGAGCTACTATCATGGATGGTTTCACTGCCA
TCAGCCATGTTGATGTATTATAAATGGCATCCTTATCTACTTATTTTAATGCTTAAAGTT
TTATATAAAATGCTTTATTTAGAAAATGTACAGAATACAGTGGTGTCAGCCTTGCCATGT
ACCGATTTCACTTGAAATTTGACACCAATCACAGTGGTTGGGGGTGGAGAAAGAGGTTCT
GGAAAACAAAAAGATAAGAATATCTTTTTCAGTTTGTAACAGTATCCTTTCTGTGGGAAG
AGAAGTTACTATTCCAGGAAGGCAGCTCCAGTGTATGTTTTGTGTATCATTGAGAATTTT
CTTTAAAACATTTTTTCAATGGTGTAATTGTTAAATGCCCAGTTTTGCTCTGCATTTGCC
TGAGGTTTCTAAAAACCAAACCAGTGCTTGGGGAGGTTAGATGTGTGTGTTTCCAGGTTG
GTGTGTATGAGTGGTTCTGCTTGCTTTTTGGCTGTGTTTTCCGCCAGAGGTTTGGAACCT
TAATCAATAATTTTGTGTGTTGTTGTTGTTGTTTTTAAGTGGCTTTGGTTTTTTTTCTCA
AGTTAAATTGTGAACACGTTTGCTTTTTAAGGGCAGGGCATCAGTTCTAGAGACTGAAAA
GTATTGTAGGTTGTATGATACACTTTCTTGATGTGTTTCTGGACACAGTTTTTTGTTATT
TTTTTCAACAACTTGAAAACTCAAAAGGGACATTTGATTAGGTTATATACTGTACATCCA
TGGCAGCTTGTTTTCTTGAGCCACTGTCTAAATTTTTTTTTCTGTTTTTATAGAAAATTT
TTATACTGATTGGTTCATAGATGATCGGTTTTATACACAGACTAAACAATACAGCACTTT
GCCAAAAAATAAGTGTAGCATTGCTTAAACATTGTGTATTAACACCAGTTCTTTGTAATT
GGGTTCAGCGGTGTATTTTGCACTACCTGGAGTTATGGTTTTTAATCTGTCAGTAAATAA
AATGTCCTTTAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               873-991, - strand, RNAz p=0.996284
               

               
               1320-1534, + strand, RNAz p=0.704894

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               873-991, - strand, RNAz p=0.996284
               

               
               1320-1534, + strand, RNAz p=0.704894

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF409114, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF409114, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               873-1576, gnl|bosTau2|chr11 (6357217-6356500)
               

               
               873-1576, gnl|Hg17|chr8 (96008184-96007495)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               873-1576, gnl|bosTau2|chr11 (6357217-6356500)
               

               
               873-1576, gnl|Hg17|chr8 (96008184-96007495)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               spl (0.715922)
               

               
               kid (0.648677)
               

               
               liv (0.585137)
               

               
               lnt (0.426925)
               

               
               lin (0.291206)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.715922)
               

               
               kid (0.648677)
               

               
               liv (0.585137)
               

               
               lnt (0.426925)
               

               
               lin (0.291206)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	873-991, - strand, RNAz p=0.996284
	1320-1534, + strand, RNAz p=0.704894

	873-1576, gnl\|bosTau2\|chr11 (6357217-6356500)
	873-1576, gnl\|Hg17\|chr8 (96008184-96007495)

	spl (0.715922)
	kid (0.648677)
	liv (0.585137)
	lnt (0.426925)
	lin (0.291206)
	rec (0.17307)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	fat (0.147427)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)