Non-Coding RNA Search

Ss1.1-rmed32c_a14.5

Sequence:


               
               TGCCACTGACTGCTGACCCCAAGCTCACGGTCACCATTTCACCCCCGCTGGCCCACACAG
GCCCCGGGCCCGTCCTCGTCAGGCTCATCTCCTATGACCTGCGTGAAGGACAGGACAGTG
AGGAGCTCAGCAGCCTGGTGAGGTCTGAGGGCCCCAGGGGCCTAGAGCTGCGGCCCCGCC
CCCAGCAGGCACCCCGCTCCAGGTCCCTGGTCGTGCATATCCATGGTGGCGGCTTCGTGG
CCCAGACGTCCAAATCCCACGAGCCTTACCTCAAGAGCTGGGCCCAGGAGCTGGGGGTCC
CCATCCTCTCCATCGACTACTCCCTAGCGCCCGAGGCCCCCTTCCCCCGTGCGCTGGAGG
AGTGCTTCTACGCCTACTGCTGGGCTGTCAAGCACTGCGGTCTCCTCGGTTCCACAGGTG
AGCGGATATGCCTCGCAGGAGACAGCGCAGGCGGGAACCTCTGCTTCACTGTGTCCCTTC
GGGCAGCAGCCTATGGAGTGCGGGTGCCAGATGGCATCATGGCAGCCTACCCGGCCACAA
TGCTGCAGTCTGCCGCCTCCCCCTCCCGCCTTCTCAGCCTCATGGACCCCCTGCTGCCCC
TCAGCGTGCTCTCCAAGTGTGTCAGTGCCTATGCTGGCGGGGAGATGGAGGATCACTCTG
ACTCAGACCAGAAGGCGCTGGGCATGATGGGACTGGTGCGGCGGGACACAGCCCTGCTCT
TCCGAGACCTCCGCCTGGGCGCCTCCTCGTGGCTCAACTCCTTCCTGGAGCTGAGTGGGC
ACAAGTCCCGACCCAACTTGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCACTGACTGCTGACCCCAAGCTCACGGTCACCATTTCACCCCCGCTGGCCCACACAG
GCCCCGGGCCCGTCCTCGTCAGGCTCATCTCCTATGACCTGCGTGAAGGACAGGACAGTG
AGGAGCTCAGCAGCCTGGTGAGGTCTGAGGGCCCCAGGGGCCTAGAGCTGCGGCCCCGCC
CCCAGCAGGCACCCCGCTCCAGGTCCCTGGTCGTGCATATCCATGGTGGCGGCTTCGTGG
CCCAGACGTCCAAATCCCACGAGCCTTACCTCAAGAGCTGGGCCCAGGAGCTGGGGGTCC
CCATCCTCTCCATCGACTACTCCCTAGCGCCCGAGGCCCCCTTCCCCCGTGCGCTGGAGG
AGTGCTTCTACGCCTACTGCTGGGCTGTCAAGCACTGCGGTCTCCTCGGTTCCACAGGTG
AGCGGATATGCCTCGCAGGAGACAGCGCAGGCGGGAACCTCTGCTTCACTGTGTCCCTTC
GGGCAGCAGCCTATGGAGTGCGGGTGCCAGATGGCATCATGGCAGCCTACCCGGCCACAA
TGCTGCAGTCTGCCGCCTCCCCCTCCCGCCTTCTCAGCCTCATGGACCCCCTGCTGCCCC
TCAGCGTGCTCTCCAAGTGTGTCAGTGCCTATGCTGGCGGGGAGATGGAGGATCACTCTG
ACTCAGACCAGAAGGCGCTGGGCATGATGGGACTGGTGCGGCGGGACACAGCCCTGCTCT
TCCGAGACCTCCGCCTGGGCGCCTCCTCGTGGCTCAACTCCTTCCTGGAGCTGAGTGGGC
ACAAGTCCCGACCCAACTTGGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33087188|gb|AAP92789.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33087188|gb|AAP92789.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               111-410, gnl|bosTau2|chr18 (45087140-45086841)
               

               
               111-410, gnl|Hg17|chr19 (47603463-47603164)
               

               
               111-410, gnl|Mm7|chr7 (22174473-22174177)
               


               
               636-789, gnl|bosTau2|chr18 (45085644-45085491)
               

               
               636-789, gnl|Hg17|chr19 (47601554-47601401)
               

               
               636-789, gnl|Mm7|chr7 (22173134-22172981)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-410, gnl|bosTau2|chr18 (45087140-45086841)
               

               
               111-410, gnl|Hg17|chr19 (47603463-47603164)
               

               
               111-410, gnl|Mm7|chr7 (22174473-22174177)
               


               
               636-789, gnl|bosTau2|chr18 (45085644-45085491)
               

               
               636-789, gnl|Hg17|chr19 (47601554-47601401)
               

               
               636-789, gnl|Mm7|chr7 (22173134-22172981)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	111-410, gnl\|bosTau2\|chr18 (45087140-45086841)
	111-410, gnl\|Hg17\|chr19 (47603463-47603164)
	111-410, gnl\|Mm7\|chr7 (22174473-22174177)

	636-789, gnl\|bosTau2\|chr18 (45085644-45085491)
	636-789, gnl\|Hg17\|chr19 (47601554-47601401)
	636-789, gnl\|Mm7\|chr7 (22173134-22172981)