Ss1.1-rmed32c_c6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGATGAGGAGGTCCATGAGGAAGTATCCCAGCCTGTCAGTGCATCTCAGAGCTCACTGA GTGATCAGCAAACAGTGCCAGGAAGTGAACAAGTTCAAGAGGACCTTCTGATTAGTCCAC AGTCTTCCTCTATAGGTTCAGTAGATGAAGGCGTCACCGAAGGGTTACCTACACTTCAAA GCACTTCTAGTACCAATGCTCATGCAGACGATGATGATAGCAGCACAGAACGACCAAGTC CAAATGGTCCAGATAGACCTTTTCAGTGTCCAACCTGTGGGGTGCGGTTCACCCGTATTC AGAACCTGAAACAGCACATGCTCATCCACTCAGGAATTAAACCATTTCAGTGTGACCGCT GTGGGAAAAAATTCACCAGGGCTTACTCGCTAAAGATGCATCGCCTAAAGCATGAAGTGA TTTCCTAGTACCGGACTACTTAAACCAGGAGCAAGAAGAGACCCTTGTTCAGTATGATCT TGGAGAACACAGTTTTGAAAGCAACTCCTCTGTTCAAATGCCTGTAATTTCACAGGTCTC CTCAACCCAGAATTGTGAAAGCACTTTTCCCTTGGGGTCTCTTGGTGGGCTGGCAGAAAA AGAGGAAGAAATGCCAGAGCAGCCAAAGATCAGTGCTGGTGCCGAGGCAACCAGAATTGA CCCCCCAAAATCAGAGCTGTCATCTATAACCATTGAGTAATTTCATGATTTGGCTTCATT TTTGATTTTTGGAAAGTGCCTGTGCTTGGTCTTGTACATTTAAATTTAATTTAATTTTCT AAACAAAAAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGATGAGGAGGTCCATGAGGAAGTATCCCAGCCTGTCAGTGCATCTCAGAGCTCACTGA GTGATCAGCAAACAGTGCCAGGAAGTGAACAAGTTCAAGAGGACCTTCTGATTAGTCCAC AGTCTTCCTCTATAGGTTCAGTAGATGAAGGCGTCACCGAAGGGTTACCTACACTTCAAA GCACTTCTAGTACCAATGCTCATGCAGACGATGATGATAGCAGCACAGAACGACCAAGTC CAAATGGTCCAGATAGACCTTTTCAGTGTCCAACCTGTGGGGTGCGGTTCACCCGTATTC AGAACCTGAAACAGCACATGCTCATCCACTCAGGAATTAAACCATTTCAGTGTGACCGCT GTGGGAAAAAATTCACCAGGGCTTACTCGCTAAAGATGCATCGCCTAAAGCATGAAGTGA TTTCCTAGTACCGGACTACTTAAACCAGGAGCAAGAAGAGACCCTTGTTCAGTATGATCT TGGAGAACACAGTTTTGAAAGCAACTCCTCTGTTCAAATGCCTGTAATTTCACAGGTCTC CTCAACCCAGAATTGTGAAAGCACTTTTCCCTTGGGGTCTCTTGGTGGGCTGGCAGAAAA AGAGGAAGAAATGCCAGAGCAGCCAAAGATCAGTGCTGGTGCCGAGGCAACCAGAATTGA CCCCCCAAAATCAGAGCTGTCATCTATAACCATTGAGTAATTTCATGATTTGGCTTCATT TTTGATTTTTGGAAAGTGCCTGTGCTTGGTCTTGTACATTTAAATTTAATTTAATTTTCT AAACAAAAAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-137, + strand, RNAz p=0.955783 | |
| 495-654, - strand, RNAz p=0.909086 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-137, + strand, RNAz p=0.955783 | |
| 495-654, - strand, RNAz p=0.909086 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr29 (29006839-29006975) | |
| 1-137, gnl|Hg17|chr11 (129636095-129635959) | |
| 1-137, gnl|Mm7|chr9 (30953742-30953878) | |
| 219-334, gnl|bosTau2|chr29 (29023185-29023300) | |
| 219-334, gnl|canFam2|chr5 (7633307-7633134) | |
| 219-334, gnl|danRer3|chr5 (24459857-24459696) | |
| 219-334, gnl|dasNov1|scaffold_51329 (12577-12434) | |
| 219-334, gnl|echTel1|scaffold_299645 (11574-11747) | |
| 219-334, gnl|fr1|chrUn (125142069-125141933) | |
| 219-334, gnl|galGal2|chr24 (1609961-1610112) | |
| 219-334, gnl|hg17|chr11 (129613522-129613695) | |
| 219-334, gnl|Hg17|chr11 (129613663-129613548) | |
| 219-334, gnl|mm7|chr9 (30963934-30963761) | |
| 219-334, gnl|Mm7|chr9 (30963791-30963906) | |
| 219-334, gnl|monDom2|scaffold_15 (19209651-19209824) | |
| 219-334, gnl|oryCun1|scaffold_208798 (62865-62695) | |
| 219-334, gnl|panTro1|chr9 (131742455-131742628) | |
| 219-334, gnl|rheMac2|chr14 (128299056-128299229) | |
| 219-334, gnl|rn3|chr8 (30896918-30896745) | |
| 219-334, gnl|tetNig1|chr16 (8175287-8175423) | |
| 219-334, gnl|xenTro1|scaffold_795 (470752-470901) | |
| 416-792, gnl|bosTau2|chr29 (29026745-29027116) | |
| 416-792, gnl|Hg17|chr11 (129609380-129609001) | |
| 416-792, gnl|Mm7|chr9 (30968306-30968677) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr29 (29006839-29006975) | |
| 1-137, gnl|Hg17|chr11 (129636095-129635959) | |
| 1-137, gnl|Mm7|chr9 (30953742-30953878) | |
| 219-334, gnl|bosTau2|chr29 (29023185-29023300) | |
| 219-334, gnl|canFam2|chr5 (7633307-7633134) | |
| 219-334, gnl|danRer3|chr5 (24459857-24459696) | |
| 219-334, gnl|dasNov1|scaffold_51329 (12577-12434) | |
| 219-334, gnl|echTel1|scaffold_299645 (11574-11747) | |
| 219-334, gnl|fr1|chrUn (125142069-125141933) | |
| 219-334, gnl|galGal2|chr24 (1609961-1610112) | |
| 219-334, gnl|hg17|chr11 (129613522-129613695) | |
| 219-334, gnl|Hg17|chr11 (129613663-129613548) | |
| 219-334, gnl|mm7|chr9 (30963934-30963761) | |
| 219-334, gnl|Mm7|chr9 (30963791-30963906) | |
| 219-334, gnl|monDom2|scaffold_15 (19209651-19209824) | |
| 219-334, gnl|oryCun1|scaffold_208798 (62865-62695) | |
| 219-334, gnl|panTro1|chr9 (131742455-131742628) | |
| 219-334, gnl|rheMac2|chr14 (128299056-128299229) | |
| 219-334, gnl|rn3|chr8 (30896918-30896745) | |
| 219-334, gnl|tetNig1|chr16 (8175287-8175423) | |
| 219-334, gnl|xenTro1|scaffold_795 (470752-470901) | |
| 416-792, gnl|bosTau2|chr29 (29026745-29027116) | |
| 416-792, gnl|Hg17|chr11 (129609380-129609001) | |
| 416-792, gnl|Mm7|chr9 (30968306-30968677) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| tbr (0.154178) | |
| med (0.116252) |