Non-Coding RNA Search

Ss1.1-rmed32c_k10.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAAGTGGGGATTTGTCCCTACTTGATTAAAATTGAGTGGAAT
TCTAGATGTGGTCATTTGTGTCATTAATTTTTTTTTGTTTCATTTTGTTTTTGATTTTTT
TTTCTCCCCTGAGTGTATGCTTAGTTGTTGAGTATATATATTTGGGACCATTAAAAATTT
TTTTGATGTAATATAACCTAACGTTGTGCTGGTACCTGTTTTGCCATGTGTAATTTTTGT
TCTACATCACAGTTCTTAATTTTTGTTTAGAGTTTTATGAAAGATGGTATAGTTTTTATT
GACAAAAAGCAAAGTAATCTTACAACTGTGTGCATACAAAAAGCAATACTATTTTGTGAC
TAAATATTTTATATTAAAATTTACATCAGCAACTGTCTTGAGAATTCAGGGAAATAGAGT
GGAATTAAAATTTCAACCGTTTTGTTAAACCTTAGAAACGTGAAATTAGTATTCCAAAGA
GATTCTGAAATTTCATATCTTGAGAAAATGATGGTACATTAAATCAAAATTGAGGATGAA
TGATTAAAAATAACATTTGACTTTTGAATAATAAAAAAGCGAAGAGTAAGAGAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAAGTGGGGATTTGTCCCTACTTGATTAAAATTGAGTGGAAT
TCTAGATGTGGTCATTTGTGTCATTAATTTTTTTTTGTTTCATTTTGTTTTTGATTTTTT
TTTCTCCCCTGAGTGTATGCTTAGTTGTTGAGTATATATATTTGGGACCATTAAAAATTT
TTTTGATGTAATATAACCTAACGTTGTGCTGGTACCTGTTTTGCCATGTGTAATTTTTGT
TCTACATCACAGTTCTTAATTTTTGTTTAGAGTTTTATGAAAGATGGTATAGTTTTTATT
GACAAAAAGCAAAGTAATCTTACAACTGTGTGCATACAAAAAGCAATACTATTTTGTGAC
TAAATATTTTATATTAAAATTTACATCAGCAACTGTCTTGAGAATTCAGGGAAATAGAGT
GGAATTAAAATTTCAACCGTTTTGTTAAACCTTAGAAACGTGAAATTAGTATTCCAAAGA
GATTCTGAAATTTCATATCTTGAGAAAATGATGGTACATTAAATCAAAATTGAGGATGAA
TGATTAAAAATAACATTTGACTTTTGAATAATAAAAAAGCGAAGAGTAAGAGAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               13-124, + strand, RNAz p=0.968777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-124, + strand, RNAz p=0.968777

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               13-84, 1408473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN550139.1|), 
blast E-value=5e-25, identity=97.26% 
               

               
               13-84, UMC-bof_0A02-020-c11 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN642169.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, EST00350 Feline cDNA, uterus library Felis catus cDNA clone E072 5' 
(gb|DN779466.1|), blast E-value=2e-27, identity=98.63% 
               

               
               13-84, nad19b03.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN872290.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, HW_Fat_71_050831_B05 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV780774.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, 1585909 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY458060.1|), 
blast E-value=5e-25, identity=97.26%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               13-84, 1408473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN550139.1|), 
blast E-value=5e-25, identity=97.26% 
               

               
               13-84, UMC-bof_0A02-020-c11 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN642169.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, EST00350 Feline cDNA, uterus library Felis catus cDNA clone E072 5' 
(gb|DN779466.1|), blast E-value=2e-27, identity=98.63% 
               

               
               13-84, nad19b03.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN872290.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, HW_Fat_71_050831_B05 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV780774.1|), blast E-value=5e-25, identity=97.26% 
               

               
               13-84, 1585909 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb|DY458060.1|), 
blast E-value=5e-25, identity=97.26%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB095930, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB095930, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-595, gnl|bosTau2|chr21 (35412610-35412036)
               

               
               13-595, gnl|Hg17|chr14 (90994288-90993708)
               

               
               13-595, gnl|Mm7|chr12 (98535452-98534864)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-595, gnl|bosTau2|chr21 (35412610-35412036)
               

               
               13-595, gnl|Hg17|chr14 (90994288-90993708)
               

               
               13-595, gnl|Mm7|chr12 (98535452-98534864)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               amn (0.417711)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	13-84, 1408473 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN550139.1\|), blast E-value=5e-25, identity=97.26%
	13-84, UMC-bof_0A02-020-c11 Ovarian follicle recruited bof Bos taurus cDNA (gb\|DN642169.1\|), blast E-value=5e-25, identity=97.26%
	13-84, EST00350 Feline cDNA, uterus library Felis catus cDNA clone E072 5' (gb\|DN779466.1\|), blast E-value=2e-27, identity=98.63%
	13-84, nad19b03.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris (gb\|DN872290.1\|), blast E-value=5e-25, identity=97.26%
	13-84, HW_Fat_71_050831_B05 Bos taurus CF-24-HW fat cDNA library Bos (gb\|DV780774.1\|), blast E-value=5e-25, identity=97.26%
	13-84, 1585909 MARC 11BOV Bos taurus cDNA 3', mRNA sequence (gb\|DY458060.1\|), blast E-value=5e-25, identity=97.26%

	13-595, gnl\|bosTau2\|chr21 (35412610-35412036)
	13-595, gnl\|Hg17\|chr14 (90994288-90993708)
	13-595, gnl\|Mm7\|chr12 (98535452-98534864)

	amn (0.417711)
	gul (0.177588)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	eli (0.151814)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	kid (0.129735)
	tra (0.123092)
	med (0.116252)