Non-Coding RNA Search

Ss1.1-rmed33c_f21.5

Sequence:


               
               ACGCGCTGCGTTTTCTCTTTCCAGCCGGCGCCGAGCGATGGGCATCTCTCGGGACAACTG
GCACAAGCGCCGCAAGACTGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTATGA
GCTGGGACGCCCCGCTGCAAACACCAAGATTGGCCCTCGCCGCATACACACAGTCCGTGT
GCGGGGAGGTAACAAGAAGTACCGGGCCTTGAGGCTGGACGTGGGGAACTTCTCCTGGGG
CTCCGAGTGTTGCACACGAAAGACGAGGATTATTGACGTTGTGTACAACGCATCCAACAA
TGAACTGGTCCGTACCAAGACCCTGGTGAAGAACTGCATTGTGCTCATTGACAGCACCCC
GTACCGACAGTGGTACGAGTCCCACTACGCGCTGCCCCTGGGTCGCAAGAAGGGGGCCAA
GTTGACTCCTGAGGAGGAAGAGATTTTAAACAAAAAGCGATCAAAGAAAATTCAGAAGAA
GTATGATGAAAGGAAAAAGAATGCCAAAATCAGCAGTCTCCTAGAGGAGCAGTTCCAGCA
GGGCAAGCTTCTTGCGTGCATCGCCTCAAGACCAGGCCAGTGTGGCCGAGCAGATGGCTA
CGTGCTAGAGGGCAAGGAGCTGGAGTTCTATCTGAGGAAAATCAAGGCCCGGAAAGGCAA
ATGAGTCCTCCTCCTGTCCCAGCTCGTGTAATAAAGGTGTTTGTTGTTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCGCTGCGTTTTCTCTTTCCAGCCGGCGCCGAGCGATGGGCATCTCTCGGGACAACTG
GCACAAGCGCCGCAAGACTGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTATGA
GCTGGGACGCCCCGCTGCAAACACCAAGATTGGCCCTCGCCGCATACACACAGTCCGTGT
GCGGGGAGGTAACAAGAAGTACCGGGCCTTGAGGCTGGACGTGGGGAACTTCTCCTGGGG
CTCCGAGTGTTGCACACGAAAGACGAGGATTATTGACGTTGTGTACAACGCATCCAACAA
TGAACTGGTCCGTACCAAGACCCTGGTGAAGAACTGCATTGTGCTCATTGACAGCACCCC
GTACCGACAGTGGTACGAGTCCCACTACGCGCTGCCCCTGGGTCGCAAGAAGGGGGCCAA
GTTGACTCCTGAGGAGGAAGAGATTTTAAACAAAAAGCGATCAAAGAAAATTCAGAAGAA
GTATGATGAAAGGAAAAAGAATGCCAAAATCAGCAGTCTCCTAGAGGAGCAGTTCCAGCA
GGGCAAGCTTCTTGCGTGCATCGCCTCAAGACCAGGCCAGTGTGGCCGAGCAGATGGCTA
CGTGCTAGAGGGCAAGGAGCTGGAGTTCTATCTGAGGAAAATCAAGGCCCGGAAAGGCAA
ATGAGTCCTCCTCCTGTCCCAGCTCGTGTAATAAAGGTGTTTGTTGTTCTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13928986|ref|NP_113894.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|13928986|ref|NP_113894.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               15-720, gnl|bosTau2|chr27 (7959301-7959994)
               

               
               15-720, gnl|Hg17|chr18 (47626010-47625310)
               

               
               15-720, gnl|Mm7|chr2 (175014924-175015620)
               


               
               16-262, gnl|bosTau2|chr23 (955629-955383)
               

               
               16-262, gnl|Hg17|chr5 (33198020-33198267)
               

               
               16-262, gnl|Mm7|chr10 (44665906-44666152)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-720, gnl|bosTau2|chr27 (7959301-7959994)
               

               
               15-720, gnl|Hg17|chr18 (47626010-47625310)
               

               
               15-720, gnl|Mm7|chr2 (175014924-175015620)
               


               
               16-262, gnl|bosTau2|chr23 (955629-955383)
               

               
               16-262, gnl|Hg17|chr5 (33198020-33198267)
               

               
               16-262, gnl|Mm7|chr10 (44665906-44666152)

Expressed library(ies): 88 entry(ies)

More info

Expressed library(ies): 88 entry(ies)

Help | Less info


               
               cst (14.9839)
               

               
               cut (13.7638)
               

               
               cje (12.7231)
               

               
               cki (10.2445)
               

               
               sto (8.63154)
               

               
               cmu (8.57409)
               

               
               che (8.04253)
               

               
               lnt (7.54234)
               

               
               pgl (7.46446)
               

               
               mcp (6.65529)
               

               
               cly (6.39402)
               

               
               cag (6.04778)
               

               
               eje (5.83119)
               

               
               nco (5.49895)
               

               
               med (5.34759)
               

               
               csp (5.31915)
               

               
               csk (4.64462)
               

               
               elu (4.23892)
               

               
               eru (4.20168)
               

               
               cga (4.18644)
               

               
               fty (3.86847)
               

               
               hea (3.68098)
               

               
               nep (3.6785)
               

               
               sme (3.66524)
               

               
               ssp (3.65903)
               

               
               cov (3.56812)
               

               
               ese (3.54206)
               

               
               duo (3.45602)
               

               
               nca (3.42184)
               

               
               amn (3.34169)
               

               
               nje (3.3184)
               

               
               jca (3.30484)
               

               
               nbm (3.27771)
               

               
               ill (3.16067)
               

               
               nlu (3.0669)
               

               
               eep (3.0641)
               

               
               nms (2.78015)
               

               
               ova (2.58264)
               

               
               pty (2.56886)
               

               
               col (2.5351)
               

               
               hlv (2.36736)
               

               
               mas (2.31335)
               

               
               ecc (2.3007)
               

               
               nmm (2.25764)
               

               
               cli (2.13936)
               

               
               ece (2.06375)
               

               
               fli (2.02881)
               

               
               ste (2.02812)
               

               
               sag (2.00987)
               

               
               jej (1.97844)
               

               
               ton (1.9305)
               

               
               fbs (1.92881)
               

               
               ebs (1.89282)
               

               
               ute (1.85898)
               

               
               hyp (1.85688)
               

               
               mgp (1.84544)
               

               
               ldo (1.84305)
               

               
               bla (1.61651)
               

               
               thg (1.52149)
               

               
               rec (1.38456)
               

               
               aor (1.36692)
               

               
               fce (1.35796)
               

               
               fhi (1.35662)
               

               
               eli (1.21451)
               

               
               eye (1.19352)
               

               
               fat (1.03199)
               

               
               mga (0.96123)
               

               
               cbe (0.956938)
               

               
               cte (0.87822)
               

               
               spc (0.793561)
               

               
               vin (0.665115)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               ski (0.586941)
               

               
               liv (0.585137)
               

               
               mgm (0.541028)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               lun (0.451467)
               

               
               lyg (0.266205)
               

               
               pan (0.23596)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 88 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (14.9839)
               

               
               cut (13.7638)
               

               
               cje (12.7231)
               

               
               cki (10.2445)
               

               
               sto (8.63154)
               

               
               cmu (8.57409)
               

               
               che (8.04253)
               

               
               lnt (7.54234)
               

               
               pgl (7.46446)
               

               
               mcp (6.65529)
               

               
               cly (6.39402)
               

               
               cag (6.04778)
               

               
               eje (5.83119)
               

               
               nco (5.49895)
               

               
               med (5.34759)
               

               
               csp (5.31915)
               

               
               csk (4.64462)
               

               
               elu (4.23892)
               

               
               eru (4.20168)
               

               
               cga (4.18644)
               

               
               fty (3.86847)
               

               
               hea (3.68098)
               

               
               nep (3.6785)
               

               
               sme (3.66524)
               

               
               ssp (3.65903)
               

               
               cov (3.56812)
               

               
               ese (3.54206)
               

               
               duo (3.45602)
               

               
               nca (3.42184)
               

               
               amn (3.34169)
               

               
               nje (3.3184)
               

               
               jca (3.30484)
               

               
               nbm (3.27771)
               

               
               ill (3.16067)
               

               
               nlu (3.0669)
               

               
               eep (3.0641)
               

               
               nms (2.78015)
               

               
               ova (2.58264)
               

               
               pty (2.56886)
               

               
               col (2.5351)
               

               
               hlv (2.36736)
               

               
               mas (2.31335)
               

               
               ecc (2.3007)
               

               
               nmm (2.25764)
               

               
               cli (2.13936)
               

               
               ece (2.06375)
               

               
               fli (2.02881)
               

               
               ste (2.02812)
               

               
               sag (2.00987)
               

               
               jej (1.97844)
               

               
               ton (1.9305)
               

               
               fbs (1.92881)
               

               
               ebs (1.89282)
               

               
               ute (1.85898)
               

               
               hyp (1.85688)
               

               
               mgp (1.84544)
               

               
               ldo (1.84305)
               

               
               bla (1.61651)
               

               
               thg (1.52149)
               

               
               rec (1.38456)
               

               
               aor (1.36692)
               

               
               fce (1.35796)
               

               
               fhi (1.35662)
               

               
               eli (1.21451)
               

               
               eye (1.19352)
               

               
               fat (1.03199)
               

               
               mga (0.96123)
               

               
               cbe (0.956938)
               

               
               cte (0.87822)
               

               
               spc (0.793561)
               

               
               vin (0.665115)
               

               
               isp (0.601504)
               

               
               fcc (0.593354)
               

               
               ski (0.586941)
               

               
               liv (0.585137)
               

               
               mgm (0.541028)
               

               
               gul (0.532765)
               

               
               sin (0.524843)
               

               
               sug (0.509165)
               

               
               lun (0.451467)
               

               
               lyg (0.266205)
               

               
               pan (0.23596)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	15-720, gnl\|bosTau2\|chr27 (7959301-7959994)
	15-720, gnl\|Hg17\|chr18 (47626010-47625310)
	15-720, gnl\|Mm7\|chr2 (175014924-175015620)

	16-262, gnl\|bosTau2\|chr23 (955629-955383)
	16-262, gnl\|Hg17\|chr5 (33198020-33198267)
	16-262, gnl\|Mm7\|chr10 (44665906-44666152)

	cst (14.9839)
	cut (13.7638)
	cje (12.7231)
	cki (10.2445)
	sto (8.63154)
	cmu (8.57409)
	che (8.04253)
	lnt (7.54234)
	pgl (7.46446)
	mcp (6.65529)
	cly (6.39402)
	cag (6.04778)
	eje (5.83119)
	nco (5.49895)
	med (5.34759)
	csp (5.31915)
	csk (4.64462)
	elu (4.23892)
	eru (4.20168)
	cga (4.18644)
	fty (3.86847)
	hea (3.68098)
	nep (3.6785)
	sme (3.66524)
	ssp (3.65903)
	cov (3.56812)
	ese (3.54206)
	duo (3.45602)
	nca (3.42184)
	amn (3.34169)
	nje (3.3184)
	jca (3.30484)
	nbm (3.27771)
	ill (3.16067)
	nlu (3.0669)
	eep (3.0641)
	nms (2.78015)
	ova (2.58264)
	pty (2.56886)
	col (2.5351)
	hlv (2.36736)
	mas (2.31335)
	ecc (2.3007)
	nmm (2.25764)
	cli (2.13936)
	ece (2.06375)
	fli (2.02881)
	ste (2.02812)
	sag (2.00987)
	jej (1.97844)
	ton (1.9305)
	fbs (1.92881)
	ebs (1.89282)
	ute (1.85898)
	hyp (1.85688)
	mgp (1.84544)
	ldo (1.84305)
	bla (1.61651)
	thg (1.52149)
	rec (1.38456)
	aor (1.36692)
	fce (1.35796)
	fhi (1.35662)
	eli (1.21451)
	eye (1.19352)
	fat (1.03199)
	mga (0.96123)
	cbe (0.956938)
	cte (0.87822)
	spc (0.793561)
	vin (0.665115)
	isp (0.601504)
	fcc (0.593354)
	ski (0.586941)
	liv (0.585137)
	mgm (0.541028)
	gul (0.532765)
	sin (0.524843)
	sug (0.509165)
	lun (0.451467)
	lyg (0.266205)
	pan (0.23596)
	bfe (0.149858)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	tra (0.123092)
	cty (0.10408)