Non-Coding RNA Search

Ss1.1-rmed34c_i13.5

Sequence:


               
               CACTGGGAATCTGGTGACATCAGAGGCAGGCCTGTCAGCCCCAGGACGAAGGTGAGCTGG
CCTGCGGCGAGCGCTGCCGTGGCCACCAGGTTGCAGGCTCGCATCATGTCAAACTGCAGT
TTGACGGTGCCTCGAGACTCCTGGAAGCCGGCCGCCTCGGAGCCCCAGCCCAGGGCCTCA
CAGTCCCGCGTGTCCGCCGGCCCGGGCCTGGCCCCCGGGCTCGGTCCACCGCGGGCCCTG
TCCAGCAGCCAGCAGGACCGCCACAGCCCAACGCTCCGCCTGCGCCCGTCCTCCAGCGTC
TGGTACACCCAGTTAGGGGTGAGGGCGGCCACGTTGTTGAGGACGAGAGAGACGAGGGCC
ACCAGCACGGCCGTGGCCACCACCTTCTGCACGGTCATCGCAGGCTTTGGTGCCGGCCCC
TTGTGGAGAAAGTCCCAGGCCTGGTCACTGCGGGCACCGGGGAACCAAGGCGCTGCCGGG
GCGGCTAGAGGACATCAGCGCTCATGCTTGGAGGCGCCGGGAAGGCCCGGGCAGCAGGTG
CGGGTGAGCCCGCCTCGCGGCCCTCCTTACCCTGCTTCCTGCACCTGGAGCAGGGCCAGG
CCTGAGCCGAAGCCGGAGCTGCCCATCCCGGGGAGGAAGCAGGGGCACCAGCCAGATTCC
AGGGTGTGAGGGCGCCGTCTTCCTGGGAGGCGAAGGCCTCGGCAGAACAGAAACCGGCTG
GCGAGGCCGGGGCCTCCCTCTCCAAAGCAGCGGCGCGGGGCTCTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGGGAATCTGGTGACATCAGAGGCAGGCCTGTCAGCCCCAGGACGAAGGTGAGCTGG
CCTGCGGCGAGCGCTGCCGTGGCCACCAGGTTGCAGGCTCGCATCATGTCAAACTGCAGT
TTGACGGTGCCTCGAGACTCCTGGAAGCCGGCCGCCTCGGAGCCCCAGCCCAGGGCCTCA
CAGTCCCGCGTGTCCGCCGGCCCGGGCCTGGCCCCCGGGCTCGGTCCACCGCGGGCCCTG
TCCAGCAGCCAGCAGGACCGCCACAGCCCAACGCTCCGCCTGCGCCCGTCCTCCAGCGTC
TGGTACACCCAGTTAGGGGTGAGGGCGGCCACGTTGTTGAGGACGAGAGAGACGAGGGCC
ACCAGCACGGCCGTGGCCACCACCTTCTGCACGGTCATCGCAGGCTTTGGTGCCGGCCCC
TTGTGGAGAAAGTCCCAGGCCTGGTCACTGCGGGCACCGGGGAACCAAGGCGCTGCCGGG
GCGGCTAGAGGACATCAGCGCTCATGCTTGGAGGCGCCGGGAAGGCCCGGGCAGCAGGTG
CGGGTGAGCCCGCCTCGCGGCCCTCCTTACCCTGCTTCCTGCACCTGGAGCAGGGCCAGG
CCTGAGCCGAAGCCGGAGCTGCCCATCCCGGGGAGGAAGCAGGGGCACCAGCCAGATTCC
AGGGTGTGAGGGCGCCGTCTTCCTGGGAGGCGAAGGCCTCGGCAGAACAGAAACCGGCTG
GCGAGGCCGGGGCCTCCCTCTCCAAAGCAGCGGCGCGGGGCTCTGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H7G5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H7G5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-635, - strand, RNAz p=0.99061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-635, - strand, RNAz p=0.99061

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               543-645, + strand, RNAmicro p=0.994641

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               543-645, + strand, RNAmicro p=0.994641

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-118, gnl|bosTau2|chr25 (2738818-2738935)
               

               
               1-118, gnl|Hg17|chr16 (1532040-1531923)
               

               
               1-118, gnl|Mm7|chr17 (23253338-23253455)
               


               
               119-727, gnl|bosTau2|chr25 (2742766-2743358)
               

               
               119-727, gnl|Hg17|chr16 (1524557-1523898)
               

               
               119-727, gnl|Mm7|chr17 (23263355-23264013)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr25 (2738818-2738935)
               

               
               1-118, gnl|Hg17|chr16 (1532040-1531923)
               

               
               1-118, gnl|Mm7|chr17 (23253338-23253455)
               


               
               119-727, gnl|bosTau2|chr25 (2742766-2743358)
               

               
               119-727, gnl|Hg17|chr16 (1524557-1523898)
               

               
               119-727, gnl|Mm7|chr17 (23263355-23264013)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-118, gnl\|bosTau2\|chr25 (2738818-2738935)
	1-118, gnl\|Hg17\|chr16 (1532040-1531923)
	1-118, gnl\|Mm7\|chr17 (23253338-23253455)

	119-727, gnl\|bosTau2\|chr25 (2742766-2743358)
	119-727, gnl\|Hg17\|chr16 (1524557-1523898)
	119-727, gnl\|Mm7\|chr17 (23263355-23264013)

	ece (0.229305)
	pla (0.133672)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)