Non-Coding RNA Search

Ss1.1-rmed34c_o20.5

Sequence:


               
               GAGAAGGAGCAAAAGAAAAATACCCCTAGACGTGGAGACGGGGGGATACCTTCCAAGGAG
GGGCAGAGCAGAGAAGCGGGAGAGCAGAGACCTGCAGGGGAAGGGAGGCAGGCCCATCAA
CACAGAAACCCAGCAAGGGAGACTGAGGAGGCAGAAGAAGAGGATGAGGAAGACGAGGAT
GAGGAGCTGGACGAAGATACCATCAGAGGAGATGTCTTCAGGATGTCCTCTCAACGCCGA
GTCCCAGCTACTCCCAGAGGCACCCCACCTCTGCCGAGCAGGTGCTCTCTGTCCTACAAA
ACCATATCCTGTATCAGTGCTGACCTCACACAGATACCACCACTGAGAGCACCAGAGATA
ACAAGTTTGGAGCTTGTTGGCAATTCTATTACCTCCATTCCGGATGAAGCATTTAATGGA
TTACCGAATTTGGAAAGGCTTGATCTGAGCAAAAATAACATCACGTCTTCAGGCATAGGG
CCAAAAGCATTCAAGCTTCTAAAGAATTTAATGCGCCTGAATATGGATGGAAACAATTTG
GTAGCGATTCCTTCAGGATTACCATCTACATTAGAAGAACTTAAAATCAATGACAACAAT
CTTCAGGTTATCGATGAAGAAAGTTTATCAGACTTAAATCAATTGGTCACCTTAGAATTG
GAAGGAAACAATCTCAGTGAAATCAATGTCAACTCTTTAGCTTTTAAACCTTTGAAGAGC
CTATCCTACTTGCGTCTGGGAAGAAATAAATTTAGAATTATACCACAGGGTCTTCCTGCT
TCTATTGAGGAATTATATCTAGAAAATAACCAAATTGAAGAAATAACTGAACTTTGTTTT
AATCACACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAATTGAAGAAAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGGAGCAAAAGAAAAATACCCCTAGACGTGGAGACGGGGGGATACCTTCCAAGGAG
GGGCAGAGCAGAGAAGCGGGAGAGCAGAGACCTGCAGGGGAAGGGAGGCAGGCCCATCAA
CACAGAAACCCAGCAAGGGAGACTGAGGAGGCAGAAGAAGAGGATGAGGAAGACGAGGAT
GAGGAGCTGGACGAAGATACCATCAGAGGAGATGTCTTCAGGATGTCCTCTCAACGCCGA
GTCCCAGCTACTCCCAGAGGCACCCCACCTCTGCCGAGCAGGTGCTCTCTGTCCTACAAA
ACCATATCCTGTATCAGTGCTGACCTCACACAGATACCACCACTGAGAGCACCAGAGATA
ACAAGTTTGGAGCTTGTTGGCAATTCTATTACCTCCATTCCGGATGAAGCATTTAATGGA
TTACCGAATTTGGAAAGGCTTGATCTGAGCAAAAATAACATCACGTCTTCAGGCATAGGG
CCAAAAGCATTCAAGCTTCTAAAGAATTTAATGCGCCTGAATATGGATGGAAACAATTTG
GTAGCGATTCCTTCAGGATTACCATCTACATTAGAAGAACTTAAAATCAATGACAACAAT
CTTCAGGTTATCGATGAAGAAAGTTTATCAGACTTAAATCAATTGGTCACCTTAGAATTG
GAAGGAAACAATCTCAGTGAAATCAATGTCAACTCTTTAGCTTTTAAACCTTTGAAGAGC
CTATCCTACTTGCGTCTGGGAAGAAATAAATTTAGAATTATACCACAGGGTCTTCCTGCT
TCTATTGAGGAATTATATCTAGAAAATAACCAAATTGAAGAAATAACTGAACTTTGTTTT
AATCACACCAGAAAGATCAATGTCATTGTACTACGTTATAACAAAATTGAAGAAAACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870816|ref|XP_588372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870816|ref|XP_588372.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-383, gnl|bosTau2|chr7 (51849109-51848717)
               

               
               6-383, gnl|Hg17|chr9 (92356850-92356462)
               

               
               6-383, gnl|Mm7|chr13 (49004570-49004953)
               


               
               624-790, gnl|bosTau2|chr7 (51838852-51838687)
               

               
               624-790, gnl|Hg17|chr9 (92347534-92347369)
               

               
               624-790, gnl|Mm7|chr13 (49011480-49011645)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-383, gnl|bosTau2|chr7 (51849109-51848717)
               

               
               6-383, gnl|Hg17|chr9 (92356850-92356462)
               

               
               6-383, gnl|Mm7|chr13 (49004570-49004953)
               


               
               624-790, gnl|bosTau2|chr7 (51838852-51838687)
               

               
               624-790, gnl|Hg17|chr9 (92347534-92347369)
               

               
               624-790, gnl|Mm7|chr13 (49011480-49011645)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	6-383, gnl\|bosTau2\|chr7 (51849109-51848717)
	6-383, gnl\|Hg17\|chr9 (92356850-92356462)
	6-383, gnl\|Mm7\|chr13 (49004570-49004953)

	624-790, gnl\|bosTau2\|chr7 (51838852-51838687)
	624-790, gnl\|Hg17\|chr9 (92347534-92347369)
	624-790, gnl\|Mm7\|chr13 (49011480-49011645)