Non-Coding RNA Search

Ss1.1-rmed35c_j5.5

Sequence:


               
               CTTCCGACTCGATCAAAGCTCAAGAATGATTCACTCAGAGACTTCTGATCCTAAAAACCG
TCGCACGCAGGATCCCCGAAGCAAGCCTTTCAGGGACCAACAGTGATGTGGTAAAGGATC
CCGCCTAGACCGATTGAGACTCGTCTTTTCTTAGAAAGAGAACGTGCGTTTTGCCCATGC
GGCCTTTCACCTTCCCGTCGGTCCTGGCGTAGCGCCTCCCGTGTCCTGGGTAGATCTTGT
ACCCGCTGAAACTGCACAGCTCGACCCTGTAAAGAAAAGCAAAAACGCATGGGGTGGAAA
GTGACTTTGGCAAGGAGAAGCCATGCCTTGAATGCCAGACATGCCGCTCTACCCGACGAT
GGGAACGGATTGGGAACCCAGGGTTTCTACTTACTTCATGGCTGGTAGCGCGGGGAAGAA
GGAAAGATGGCGAAGAGAAAGAAGGAATCATGGGAAGAGGCCTTATAAGGTCATGGGAGG
CAACCTTCTCCCACAATTCCTTTCCCTAACTCCGGCACTCGGTGATGATGTCACCCGACC
TGGGCGGCGGAGTTAGAGTTCCTCAGCGGCCACCTCCCCCCGGAATAATTACGCTAGAGG
CAGTCCAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGACTCGATCAAAGCTCAAGAATGATTCACTCAGAGACTTCTGATCCTAAAAACCG
TCGCACGCAGGATCCCCGAAGCAAGCCTTTCAGGGACCAACAGTGATGTGGTAAAGGATC
CCGCCTAGACCGATTGAGACTCGTCTTTTCTTAGAAAGAGAACGTGCGTTTTGCCCATGC
GGCCTTTCACCTTCCCGTCGGTCCTGGCGTAGCGCCTCCCGTGTCCTGGGTAGATCTTGT
ACCCGCTGAAACTGCACAGCTCGACCCTGTAAAGAAAAGCAAAAACGCATGGGGTGGAAA
GTGACTTTGGCAAGGAGAAGCCATGCCTTGAATGCCAGACATGCCGCTCTACCCGACGAT
GGGAACGGATTGGGAACCCAGGGTTTCTACTTACTTCATGGCTGGTAGCGCGGGGAAGAA
GGAAAGATGGCGAAGAGAAAGAAGGAATCATGGGAAGAGGCCTTATAAGGTCATGGGAGG
CAACCTTCTCCCACAATTCCTTTCCCTAACTCCGGCACTCGGTGATGATGTCACCCGACC
TGGGCGGCGGAGTTAGAGTTCCTCAGCGGCCACCTCCCCCCGGAATAATTACGCTAGAGG
CAGTCCAGGCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-545, - strand, RNAz p=0.997804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-545, - strand, RNAz p=0.997804

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               435-565, - strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               435-565, - strand, RNAmicro p=1

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000986, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000986, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-611, gnl|bosTau2|chr11 (21704580-21703978)
               

               
               8-611, gnl|Hg17|chr3 (102887836-102888433)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-611, gnl|bosTau2|chr11 (21704580-21703978)
               

               
               8-611, gnl|Hg17|chr3 (102887836-102888433)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               med (0.116252)

	8-611, gnl\|bosTau2\|chr11 (21704580-21703978)
	8-611, gnl\|Hg17\|chr3 (102887836-102888433)