Non-Coding RNA Search

Ss1.1-rmga01_a15.5

Sequence:


               
               GCTACCTCTAGGCCCGCACCCGAGTTGGTTTATCTTTCCCAGGCTAGGAGTAATAAGTGC
CAGTAAGTACTCACATATTTCTTGTGCTGCGCCACAACGGGAACTCCCGTAGCCATGGCG
GCTAACGCTACGACTAACCCGTCGCAGCTGCTACCTCTAGAGCTTGTAGACAAGTGTATA
GGATCAAGAATTCACATTGTGATGAAGAGTGATAAAGAGATTGTTGGCACGCTTCTCGGA
TTTGATGACTTTGTCAATATGGTACTGGAAGATGTCACTGAATTTGAAATCACACCAGAA
GGAAGAAGAATTACTAAGTTAGATCAAATTTTGCTAAATGGAAATAATATAACAATGCTG
GTTCCTGGAGGAGAAGGACCTGAAGTATGAATGGATTTCTTCACTTATGCTAGATTCTGT
TTTGTCTTATGACAACAAAATGTAACTTTTTTTTAAACTTTTAATGAACATTTGGATTCT
GTGAAGCCAAGTTTCCCGTTAAAGGGAAATGCTTTGAAGAGGCATTGTTAATGTCAATTT
TTGTAAATTAATCATGATTATCTTGGGAAAAGAATAGTTTGTTCTTTGAAGACAAAAATA
AAGGTGTTTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACCTCTAGGCCCGCACCCGAGTTGGTTTATCTTTCCCAGGCTAGGAGTAATAAGTGC
CAGTAAGTACTCACATATTTCTTGTGCTGCGCCACAACGGGAACTCCCGTAGCCATGGCG
GCTAACGCTACGACTAACCCGTCGCAGCTGCTACCTCTAGAGCTTGTAGACAAGTGTATA
GGATCAAGAATTCACATTGTGATGAAGAGTGATAAAGAGATTGTTGGCACGCTTCTCGGA
TTTGATGACTTTGTCAATATGGTACTGGAAGATGTCACTGAATTTGAAATCACACCAGAA
GGAAGAAGAATTACTAAGTTAGATCAAATTTTGCTAAATGGAAATAATATAACAATGCTG
GTTCCTGGAGGAGAAGGACCTGAAGTATGAATGGATTTCTTCACTTATGCTAGATTCTGT
TTTGTCTTATGACAACAAAATGTAACTTTTTTTTAAACTTTTAATGAACATTTGGATTCT
GTGAAGCCAAGTTTCCCGTTAAAGGGAAATGCTTTGAAGAGGCATTGTTAATGTCAATTT
TTGTAAATTAATCATGATTATCTTGGGAAAAGAATAGTTTGTTCTTTGAAGACAAAAATA
AAGGTGTTTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51105856|gb|EAL24440.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51105856|gb|EAL24440.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               110-648, gnl|bosTau2|chr27 (12659317-12659850)
               

               
               110-648, gnl|Hg17|chr7 (16701480-16701977)
               

               
               110-648, gnl|Mm7|chr1 (28800067-28799573)
               


               
               130-634, gnl|bosTau2|chr23 (37095730-37096229)
               

               
               130-634, gnl|Hg17|chr7 (16701503-16701981)
               

               
               130-634, gnl|Mm7|chr1 (28800047-28799579)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-648, gnl|bosTau2|chr27 (12659317-12659850)
               

               
               110-648, gnl|Hg17|chr7 (16701480-16701977)
               

               
               110-648, gnl|Mm7|chr1 (28800067-28799573)
               


               
               130-634, gnl|bosTau2|chr23 (37095730-37096229)
               

               
               130-634, gnl|Hg17|chr7 (16701503-16701981)
               

               
               130-634, gnl|Mm7|chr1 (28800047-28799579)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               thg (1.77507)
               

               
               fce (1.08637)
               

               
               mgp (0.922722)
               

               
               isp (0.902256)
               

               
               mga (0.64082)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               med (0.465008)
               

               
               cmu (0.372787)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.77507)
               

               
               fce (1.08637)
               

               
               mgp (0.922722)
               

               
               isp (0.902256)
               

               
               mga (0.64082)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               rec (0.519211)
               

               
               fco (0.471624)
               

               
               med (0.465008)
               

               
               cmu (0.372787)
               

               
               pty (0.285429)
               

               
               ova (0.258264)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	110-648, gnl\|bosTau2\|chr27 (12659317-12659850)
	110-648, gnl\|Hg17\|chr7 (16701480-16701977)
	110-648, gnl\|Mm7\|chr1 (28800067-28799573)

	130-634, gnl\|bosTau2\|chr23 (37095730-37096229)
	130-634, gnl\|Hg17\|chr7 (16701503-16701981)
	130-634, gnl\|Mm7\|chr1 (28800047-28799579)

	thg (1.77507)
	fce (1.08637)
	mgp (0.922722)
	isp (0.902256)
	mga (0.64082)
	sag (0.548145)
	lyg (0.532411)
	rec (0.519211)
	fco (0.471624)
	med (0.465008)
	cmu (0.372787)
	pty (0.285429)
	ova (0.258264)
	cbe (0.239234)
	spc (0.226732)
	hea (0.204499)
	nbm (0.198649)
	aor (0.195274)
	fty (0.17584)
	sin (0.174948)
	eli (0.151814)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)