Non-Coding RNA Search

Ss1.1-rmga02_i2.5

Sequence:


               
               GGCAAATAAATAATTTTAGGGCCTAGATTCAGTCTTTGGAACTAATTTTTTTTTTTCCAC
TTAATTTAAATTTAAATTATGCAGAGATCAATGTACAGTTTTACTAAGTTTTGGCACCTT
TGACCTTTTCTAAATCAGAACTAATCTATGGATATTGAAGTTAACGGATGAAATACTCTT
TGGCACATTTTGTAGATTTTTGGCCACTTAAATACCAAGTGCCCAAATAATAGAAAACTG
CTCCCTTCACCTGAGCAATAAAAACATGTTTGTAATTTTTAGGTAGCATAGACTAATTCC
CAAATGCCGCAGACTCGCACTATATTACAGGGTGATATGATGTAATACCTTGCCATTCTC
CAGATAATGTATGTCATTCAAATATAGCTTTTGTGGTTTAATCTGGTAAGTGGATCTTAA
TGAAATCATTACCTTTGAAACATCGAACCCTTCTTTTAAGCTTTTTTTTTTAATGCAATG
GATCAAAAAAGATTCACATTCGATTTTTGTCTACAACGTCCTTGAATATTTTTAGCATTG
TGTAATCTATGAGCAGCACAAAAGTTTTATTCTGATGACCACTCACACAATTTCTGCTTT
TATTTTGTCCTGTTGTGCACCTCTTTTATGAAAAATAAATGATTATTAGGCATTGCTCTC
TCTGCAAGTTCATTAAATCTAGAATGTTGTCTTTTTAAGATACCGTGGCTGAGTGCTCCT
AAGCCATCTGTTAAATGACTTCCCGTTGTCTGTGTGTGTGTTCATGTGTGCGCCAGGGAT
GGGCTTCTCCTCAGACCCACGACTGTCTGCAGTGTCTCAGCCGTCAGAATGAAAACATTA
TCAATCAGTACCCAACAACAGCTGTTTTTGACAAGTTTCTGTCTGACGCCTAATGCTTTA
CAACTGTCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAATAAATAATTTTAGGGCCTAGATTCAGTCTTTGGAACTAATTTTTTTTTTTCCAC
TTAATTTAAATTTAAATTATGCAGAGATCAATGTACAGTTTTACTAAGTTTTGGCACCTT
TGACCTTTTCTAAATCAGAACTAATCTATGGATATTGAAGTTAACGGATGAAATACTCTT
TGGCACATTTTGTAGATTTTTGGCCACTTAAATACCAAGTGCCCAAATAATAGAAAACTG
CTCCCTTCACCTGAGCAATAAAAACATGTTTGTAATTTTTAGGTAGCATAGACTAATTCC
CAAATGCCGCAGACTCGCACTATATTACAGGGTGATATGATGTAATACCTTGCCATTCTC
CAGATAATGTATGTCATTCAAATATAGCTTTTGTGGTTTAATCTGGTAAGTGGATCTTAA
TGAAATCATTACCTTTGAAACATCGAACCCTTCTTTTAAGCTTTTTTTTTTAATGCAATG
GATCAAAAAAGATTCACATTCGATTTTTGTCTACAACGTCCTTGAATATTTTTAGCATTG
TGTAATCTATGAGCAGCACAAAAGTTTTATTCTGATGACCACTCACACAATTTCTGCTTT
TATTTTGTCCTGTTGTGCACCTCTTTTATGAAAAATAAATGATTATTAGGCATTGCTCTC
TCTGCAAGTTCATTAAATCTAGAATGTTGTCTTTTTAAGATACCGTGGCTGAGTGCTCCT
AAGCCATCTGTTAAATGACTTCCCGTTGTCTGTGTGTGTGTTCATGTGTGCGCCAGGGAT
GGGCTTCTCCTCAGACCCACGACTGTCTGCAGTGTCTCAGCCGTCAGAATGAAAACATTA
TCAATCAGTACCCAACAACAGCTGTTTTTGACAAGTTTCTGTCTGACGCCTAATGCTTTA
CAACTGTCAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               779-912, - strand, RNAz p=0.884191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               779-912, - strand, RNAz p=0.884191

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               897-981, - strand, RNAmicro p=0.90897

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               897-981, - strand, RNAmicro p=0.90897

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-912, gnl|bosTau2|chr20 (13936901-13935981)
               

               
               2-912, gnl|Hg17|chr5 (53217039-53216108)
               

               
               2-912, gnl|Mm7|chr13 (111328054-111329013)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-912, gnl|bosTau2|chr20 (13936901-13935981)
               

               
               2-912, gnl|Hg17|chr5 (53217039-53216108)
               

               
               2-912, gnl|Mm7|chr13 (111328054-111329013)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mgp (0.692042)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	2-912, gnl\|bosTau2\|chr20 (13936901-13935981)
	2-912, gnl\|Hg17\|chr5 (53217039-53216108)
	2-912, gnl\|Mm7\|chr13 (111328054-111329013)

	mgp (0.692042)
	mga (0.160205)
	lun (0.150489)
	ssp (0.13552)
	ret (0.128733)
	bla (0.124347)
	ecc (0.115035)
	cbl (0.114797)