Non-Coding RNA Search

Ss1.1-rmga05_m19.5

Sequence:


               
               CTAAATTGCAAGAGTTTATATTTGATAGACCATATAGTAGAACGCTGGAGGCTGAAGCTG
ACAAAATTGGACTAGAGCTTGCTGCAAAGGCTTGTGTGGACGTCAGAGCCAGTTCAGTGT
TTTGGCAGCAGATGGAATTTGCAGATAGCCTCTATGGTCATGCCAAGCTGCCAGAGTGGT
TATCTACACACCCTTCTCATGGCAATCGAGCTGAGTACTTGGATACACTCATACCCCAGG
CTCTCAAAATTAGAGAGATCTGTAATTGCCCACCACTTTCTGGGCCAGACCCTCGATTAC
TATTCAAACTCAGCATGAAGCATTTTCTTGAAGAAGCAGAGAAAGAAGACCTGAATATCA
CTGTTAAACAGAAAAGGGATACTCTTCCCATTCAAAACCAGAAGCAAATACCATTAACAT
GTATAGTTGAGAAATGAACTGCCAAATGAATTAAAATTTATGAGATACAGGATATATGAA
GAATGTGGCAATCCTTATCATTTTTATGTTACTTTTTTAAAATGATGTTTGAAATAAAAA
AGATACTCAGGGTCAAATCATGTATATTATAAGTATTATCTAAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAATTGCAAGAGTTTATATTTGATAGACCATATAGTAGAACGCTGGAGGCTGAAGCTG
ACAAAATTGGACTAGAGCTTGCTGCAAAGGCTTGTGTGGACGTCAGAGCCAGTTCAGTGT
TTTGGCAGCAGATGGAATTTGCAGATAGCCTCTATGGTCATGCCAAGCTGCCAGAGTGGT
TATCTACACACCCTTCTCATGGCAATCGAGCTGAGTACTTGGATACACTCATACCCCAGG
CTCTCAAAATTAGAGAGATCTGTAATTGCCCACCACTTTCTGGGCCAGACCCTCGATTAC
TATTCAAACTCAGCATGAAGCATTTTCTTGAAGAAGCAGAGAAAGAAGACCTGAATATCA
CTGTTAAACAGAAAAGGGATACTCTTCCCATTCAAAACCAGAAGCAAATACCATTAACAT
GTATAGTTGAGAAATGAACTGCCAAATGAATTAAAATTTATGAGATACAGGATATATGAA
GAATGTGGCAATCCTTATCATTTTTATGTTACTTTTTTAAAATGATGTTTGAAATAAAAA
AGATACTCAGGGTCAAATCATGTATATTATAAGTATTATCTAAATTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836411|ref|XP_612973.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836411|ref|XP_612973.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.835718

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.835718

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-214, gnl|bosTau2|chr6 (16091559-16091771)
               


               
               238-588, gnl|bosTau2|chr3 (65181602-65181250)
               

               
               238-588, gnl|canFam2|chr5 (54217936-54217419)
               

               
               238-588, gnl|hg17|chr1 (58658491-58659014)
               

               
               238-588, gnl|Hg17|chr1 (58658869-58658513)
               

               
               238-588, gnl|loxAfr1|scaffold_7223 (86002-86518)
               

               
               238-588, gnl|mm7|chr4 (102742796-102742302)
               

               
               238-588, gnl|Mm7|chr4 (102742410-102742771)
               

               
               238-588, gnl|monDom2|scaffold_40 (16978904-16978382)
               

               
               238-588, gnl|oryCun1|scaffold_215244 (151297-151792)
               

               
               238-588, gnl|panTro1|chr1 (56987758-56988282)
               

               
               238-588, gnl|rheMac2|chr1 (61333827-61334355)
               

               
               238-588, gnl|rn3|chr5 (124319863-124319374)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-214, gnl|bosTau2|chr6 (16091559-16091771)
               


               
               238-588, gnl|bosTau2|chr3 (65181602-65181250)
               

               
               238-588, gnl|canFam2|chr5 (54217936-54217419)
               

               
               238-588, gnl|hg17|chr1 (58658491-58659014)
               

               
               238-588, gnl|Hg17|chr1 (58658869-58658513)
               

               
               238-588, gnl|loxAfr1|scaffold_7223 (86002-86518)
               

               
               238-588, gnl|mm7|chr4 (102742796-102742302)
               

               
               238-588, gnl|Mm7|chr4 (102742410-102742771)
               

               
               238-588, gnl|monDom2|scaffold_40 (16978904-16978382)
               

               
               238-588, gnl|oryCun1|scaffold_215244 (151297-151792)
               

               
               238-588, gnl|panTro1|chr1 (56987758-56988282)
               

               
               238-588, gnl|rheMac2|chr1 (61333827-61334355)
               

               
               238-588, gnl|rn3|chr5 (124319863-124319374)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	1-214, gnl\|bosTau2\|chr6 (16091559-16091771)

	238-588, gnl\|bosTau2\|chr3 (65181602-65181250)
	238-588, gnl\|canFam2\|chr5 (54217936-54217419)
	238-588, gnl\|hg17\|chr1 (58658491-58659014)
	238-588, gnl\|Hg17\|chr1 (58658869-58658513)
	238-588, gnl\|loxAfr1\|scaffold_7223 (86002-86518)
	238-588, gnl\|mm7\|chr4 (102742796-102742302)
	238-588, gnl\|Mm7\|chr4 (102742410-102742771)
	238-588, gnl\|monDom2\|scaffold_40 (16978904-16978382)
	238-588, gnl\|oryCun1\|scaffold_215244 (151297-151792)
	238-588, gnl\|panTro1\|chr1 (56987758-56988282)
	238-588, gnl\|rheMac2\|chr1 (61333827-61334355)
	238-588, gnl\|rn3\|chr5 (124319863-124319374)

	fcc (0.197785)
	mga (0.160205)
	liv (0.146284)
	lin (0.145603)
	ret (0.128733)