Ss1.1-rmga09_f22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAAGATGGCGGACGGTGACGGCGTAGGTGAAGCAGCAACTGCTGCGGCATCTCCTCCA GCACCTGCTCCCGGCCTGAGCCCTTCGCTGGGCTGGAGGGAGCGGCTACGCGCCGGCCTG GCGGGCACTGGGGCCTCGCTGTGGTTCGTGGCGGGGCTGGGGCTGCTTTACGCTCTAAGG GTCCCGCTGAGGCTGTGTGAGAATTTGGCAGCGGTGACAGTCTTTTTAAATTCATTGACA CCCAAATTCTATGTGGCACTTACAGGGACATCTTCTTTGATATCAGGGCTAATATTTATA TTTGAATGGTGGTACTTCCATAAACATGGCACGTCTTTTATTGAGCAAGTATCTGTAAGC CATTTGAGACCATTGATGGGAGGAACAGAAAGCAGTATTTCAGAGCCAGGTTCTTCTAGC AACAGAGAAAGTGAAACCAGCAGACAGAATTTGTCGGAATGCAAGGTATGGAGAAATCCT CTAAATCTCTTCAGAGGAGCAGAATATAGGAGATACACTTGGGTGACTGGTAAAGAGCCA CTTACATATTATGACATGAATTTGTCAGCTCAGGACCATCAGACTTTTTTCACCTGTGAC ACGGACTTTTTACGTCCATCAGACATAGTTATGCAGAAGGCATGGAGGGAAAGAAATCCT CCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACGGCA TATGTTCTACTGGCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAAGTTATTTAAA CAAGCACTCAAGGCAGGAGAAACAATTTATAGGCAGTCACAGCAGTGCCAGCACCAAAGT CCTCAGCATGAAGCTCAACTGAGGAGAGATACCAACGTACTAGTATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAAGATGGCGGACGGTGACGGCGTAGGTGAAGCAGCAACTGCTGCGGCATCTCCTCCA GCACCTGCTCCCGGCCTGAGCCCTTCGCTGGGCTGGAGGGAGCGGCTACGCGCCGGCCTG GCGGGCACTGGGGCCTCGCTGTGGTTCGTGGCGGGGCTGGGGCTGCTTTACGCTCTAAGG GTCCCGCTGAGGCTGTGTGAGAATTTGGCAGCGGTGACAGTCTTTTTAAATTCATTGACA CCCAAATTCTATGTGGCACTTACAGGGACATCTTCTTTGATATCAGGGCTAATATTTATA TTTGAATGGTGGTACTTCCATAAACATGGCACGTCTTTTATTGAGCAAGTATCTGTAAGC CATTTGAGACCATTGATGGGAGGAACAGAAAGCAGTATTTCAGAGCCAGGTTCTTCTAGC AACAGAGAAAGTGAAACCAGCAGACAGAATTTGTCGGAATGCAAGGTATGGAGAAATCCT CTAAATCTCTTCAGAGGAGCAGAATATAGGAGATACACTTGGGTGACTGGTAAAGAGCCA CTTACATATTATGACATGAATTTGTCAGCTCAGGACCATCAGACTTTTTTCACCTGTGAC ACGGACTTTTTACGTCCATCAGACATAGTTATGCAGAAGGCATGGAGGGAAAGAAATCCT CCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGACTGTGCCACGGCA TATGTTCTACTGGCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAAGTTATTTAAA CAAGCACTCAAGGCAGGAGAAACAATTTATAGGCAGTCACAGCAGTGCCAGCACCAAAGT CCTCAGCATGAAGCTCAACTGAGGAGAGATACCAACGTACTAGTATAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-220, gnl|bosTau2|chr3 (27329835-27329618) | |
| 1-220, gnl|Hg17|chr1 (112873783-112873566) | |
| 1-220, gnl|Mm7|chr3 (104658201-104658427) | |
| 298-455, gnl|bosTau2|chr3 (27324853-27324693) | |
| 298-455, gnl|Hg17|chr1 (112865667-112865507) | |
| 298-455, gnl|Mm7|chr3 (104663990-104664153) | |
| 511-633, gnl|bosTau2|chr3 (27316147-27316025) | |
| 511-633, gnl|canFam2|chr17 (66039731-66039639) | |
| 511-633, gnl|danRer3|chrNA (127676887-127676979) | |
| 511-633, gnl|dasNov1|scaffold_9074 (55358-55450) | |
| 511-633, gnl|echTel1|scaffold_257192 (3967-4059) | |
| 511-633, gnl|fr1|chrUn (44377479-44377387) | |
| 511-633, gnl|galGal2|chr26 (2100499-2100591) | |
| 511-633, gnl|hg17|chr1 (112852631-112852723) | |
| 511-633, gnl|Hg17|chr1 (112852752-112852630) | |
| 511-633, gnl|loxAfr1|scaffold_18927 (43107-43014) | |
| 511-633, gnl|mm7|chr3 (104668093-104668000) | |
| 511-633, gnl|Mm7|chr3 (104667969-104668092) | |
| 511-633, gnl|monDom2|scaffold_0 (2735459-2735367) | |
| 511-633, gnl|oryCun1|scaffold_143769 (361-269) | |
| 511-633, gnl|panTro1|chr1 (109407727-109407635) | |
| 511-633, gnl|rheMac2|chr1 (115591311-115591403) | |
| 511-633, gnl|rn3|chr2 (200098107-200098015) | |
| 511-633, gnl|tetNig1|chr11 (3166292-3166384) | |
| 511-633, gnl|xenTro1|scaffold_11 (2975859-2975767) | |
| 708-863, gnl|bosTau2|chr3 (27297914-27297759) | |
| 708-863, gnl|Hg17|chr1 (112838790-112838635) | |
| 708-863, gnl|Mm7|chr3 (104682435-104682590) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-220, gnl|bosTau2|chr3 (27329835-27329618) | |
| 1-220, gnl|Hg17|chr1 (112873783-112873566) | |
| 1-220, gnl|Mm7|chr3 (104658201-104658427) | |
| 298-455, gnl|bosTau2|chr3 (27324853-27324693) | |
| 298-455, gnl|Hg17|chr1 (112865667-112865507) | |
| 298-455, gnl|Mm7|chr3 (104663990-104664153) | |
| 511-633, gnl|bosTau2|chr3 (27316147-27316025) | |
| 511-633, gnl|canFam2|chr17 (66039731-66039639) | |
| 511-633, gnl|danRer3|chrNA (127676887-127676979) | |
| 511-633, gnl|dasNov1|scaffold_9074 (55358-55450) | |
| 511-633, gnl|echTel1|scaffold_257192 (3967-4059) | |
| 511-633, gnl|fr1|chrUn (44377479-44377387) | |
| 511-633, gnl|galGal2|chr26 (2100499-2100591) | |
| 511-633, gnl|hg17|chr1 (112852631-112852723) | |
| 511-633, gnl|Hg17|chr1 (112852752-112852630) | |
| 511-633, gnl|loxAfr1|scaffold_18927 (43107-43014) | |
| 511-633, gnl|mm7|chr3 (104668093-104668000) | |
| 511-633, gnl|Mm7|chr3 (104667969-104668092) | |
| 511-633, gnl|monDom2|scaffold_0 (2735459-2735367) | |
| 511-633, gnl|oryCun1|scaffold_143769 (361-269) | |
| 511-633, gnl|panTro1|chr1 (109407727-109407635) | |
| 511-633, gnl|rheMac2|chr1 (115591311-115591403) | |
| 511-633, gnl|rn3|chr2 (200098107-200098015) | |
| 511-633, gnl|tetNig1|chr11 (3166292-3166384) | |
| 511-633, gnl|xenTro1|scaffold_11 (2975859-2975767) | |
| 708-863, gnl|bosTau2|chr3 (27297914-27297759) | |
| 708-863, gnl|Hg17|chr1 (112838790-112838635) | |
| 708-863, gnl|Mm7|chr3 (104682435-104682590) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.160205) | |
| lyg (0.133103) | |
| med (0.116252) |