Non-Coding RNA Search

Ss1.1-rmga15_a24.5

Sequence:


               
               ACTGATGCAAGCTGCTGATTTATAAATCTGGCATTGACCAGAACCATTTGAGTCACTTCA
CTTCTGGCTAAGATAATTTCCTGAAGGTCCATGCCAATGCAAAATACAAATGTTGTTAAT
CTTACATATCAGAAGTTACTAGAATAGATTTGAGGCAAATCCTACCCTTTTAACCCAAGA
AATTTTGAGTTACTGAACTGTGAGGCCTTTTAGGTATCATAGATAACTATACATTATGAA
CTCTAAGTCAACATAATTCCAGTGATGATTTTAGGGATCAGTCATCAAATTCATATGATT
ATACTTATTCAGATAATTCACTTGATGGTTCCACTTGTTTGTCCAAAAACAAAAAACAGA
GAGATTTGTGAAGTCTTTGACCTTTCAACCCTTTGAGAAATGAAGCCATGGCAATGTATA
TTCAGGACCTCCTCATATTGGTAGAAAACAGACTGTTTACTCAATAGTACCTTTATGTAA
TAAATACATTTCTCTTGATAAATGTCTTAAAATGTTAACCTCCAGATTATCTCTCATTCT
GGGTAAGTAACACTGAGTAAAAATTTATTCAATTAGTTTTCCCACAAAGTTTATTTCTAT
GAATATCTTCATGTTCATTACCTTGACTAATTTTAAGCCCCTCAGTTTCTGGAAAGGCTC
TTTAATTTGTATTCAAAATTCCTATGCATTTTGACTATAAACTTTTAGGAGAGAGTTTTA
TTTATATTGCCTAGTACCAGACTTACCATATAAATGCTACTATGTATGCCATGCTTGTCC
TTCCTACACAGGGGCAATGTCATCTCATATTGCCTGACAGGGTCATGTAAGTGACTTTGT
ATCAAAAACATTACCTTTGGGGGCTGATTGGCACCATTGTATTTTTCCAAGTCTAATTTC
AGTATTAAACGTATTCTTTAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGATGCAAGCTGCTGATTTATAAATCTGGCATTGACCAGAACCATTTGAGTCACTTCA
CTTCTGGCTAAGATAATTTCCTGAAGGTCCATGCCAATGCAAAATACAAATGTTGTTAAT
CTTACATATCAGAAGTTACTAGAATAGATTTGAGGCAAATCCTACCCTTTTAACCCAAGA
AATTTTGAGTTACTGAACTGTGAGGCCTTTTAGGTATCATAGATAACTATACATTATGAA
CTCTAAGTCAACATAATTCCAGTGATGATTTTAGGGATCAGTCATCAAATTCATATGATT
ATACTTATTCAGATAATTCACTTGATGGTTCCACTTGTTTGTCCAAAAACAAAAAACAGA
GAGATTTGTGAAGTCTTTGACCTTTCAACCCTTTGAGAAATGAAGCCATGGCAATGTATA
TTCAGGACCTCCTCATATTGGTAGAAAACAGACTGTTTACTCAATAGTACCTTTATGTAA
TAAATACATTTCTCTTGATAAATGTCTTAAAATGTTAACCTCCAGATTATCTCTCATTCT
GGGTAAGTAACACTGAGTAAAAATTTATTCAATTAGTTTTCCCACAAAGTTTATTTCTAT
GAATATCTTCATGTTCATTACCTTGACTAATTTTAAGCCCCTCAGTTTCTGGAAAGGCTC
TTTAATTTGTATTCAAAATTCCTATGCATTTTGACTATAAACTTTTAGGAGAGAGTTTTA
TTTATATTGCCTAGTACCAGACTTACCATATAAATGCTACTATGTATGCCATGCTTGTCC
TTCCTACACAGGGGCAATGTCATCTCATATTGCCTGACAGGGTCATGTAAGTGACTTTGT
ATCAAAAACATTACCTTTGGGGGCTGATTGGCACCATTGTATTTTTCCAAGTCTAATTTC
AGTATTAAACGTATTCTTTAATTA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-652, gnl|bosTau2|chr29 (19818339-19819016)
               

               
               1-652, gnl|Hg17|chr10 (65051635-65052298)
               


               
               671-903, gnl|bosTau2|chr29 (19818993-19819225)
               

               
               671-903, gnl|Hg17|chr10 (65052275-65052507)
               

               
               671-903, gnl|Mm7|chr10 (66598875-66598623)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-652, gnl|bosTau2|chr29 (19818339-19819016)
               

               
               1-652, gnl|Hg17|chr10 (65051635-65052298)
               


               
               671-903, gnl|bosTau2|chr29 (19818993-19819225)
               

               
               671-903, gnl|Hg17|chr10 (65052275-65052507)
               

               
               671-903, gnl|Mm7|chr10 (66598875-66598623)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-652, gnl\|bosTau2\|chr29 (19818339-19819016)
	1-652, gnl\|Hg17\|chr10 (65051635-65052298)

	671-903, gnl\|bosTau2\|chr29 (19818993-19819225)
	671-903, gnl\|Hg17\|chr10 (65052275-65052507)
	671-903, gnl\|Mm7\|chr10 (66598875-66598623)

	mga (0.160205)
	bfe (0.149858)
	lin (0.145603)
	ret (0.128733)
	eru (0.120048)
	cty (0.10408)