Non-Coding RNA Search

Ss1.1-rmga16_o18.5

Sequence:


               
               ATGTGAAGAATGGAAAAATGTATTTTTGCATGAAAACAGACCACTTATAAACTTGCTTCA
TATCTCAGGAAAAAAGGAGAATGATATATAAAATTGATAAACTATATGGTCGAGTTAAGT
TGCTGTATTTTCCTGCCTGTCTTTATTTTAAGGAAGCATATACATGAAAAGAAAAAAAGA
TCTTCATAGTTCCTGAATTTTCTCTCAAGTATGCTGCACAGTCCTTTCTGTGAATCTACA
GTTAACCCCAGTAAGAATGGAATTAGCATTCCAGTGAGGACAAGCCCTAATGAGAAACTT
TTCAGTTAAAGCACATGAATGGTTATAACCCAGAGGCAATAGATAAATACTACCTGGAAC
ACAAGCATTTCTAAACTTGGTCCCAAACAAAAGGTTTTCATGAGGCGACCATGGCTTTTA
AACATTCATTTGACTGATTATTTTTATTTTCCTTGTTAAATCATTGCAACAGTTGCATGG
GGGGAAATGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGAAGAATGGAAAAATGTATTTTTGCATGAAAACAGACCACTTATAAACTTGCTTCA
TATCTCAGGAAAAAAGGAGAATGATATATAAAATTGATAAACTATATGGTCGAGTTAAGT
TGCTGTATTTTCCTGCCTGTCTTTATTTTAAGGAAGCATATACATGAAAAGAAAAAAAGA
TCTTCATAGTTCCTGAATTTTCTCTCAAGTATGCTGCACAGTCCTTTCTGTGAATCTACA
GTTAACCCCAGTAAGAATGGAATTAGCATTCCAGTGAGGACAAGCCCTAATGAGAAACTT
TTCAGTTAAAGCACATGAATGGTTATAACCCAGAGGCAATAGATAAATACTACCTGGAAC
ACAAGCATTTCTAAACTTGGTCCCAAACAAAAGGTTTTCATGAGGCGACCATGGCTTTTA
AACATTCATTTGACTGATTATTTTTATTTTCCTTGTTAAATCATTGCAACAGTTGCATGG
GGGGAAATGGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr7 (20570843-20570380)
               

               
               1-492, gnl|Hg17|chr5 (131314245-131313761)
               

               
               1-492, gnl|Mm7|chr11 (54320845-54321315)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr7 (20570843-20570380)
               

               
               1-492, gnl|Hg17|chr5 (131314245-131313761)
               

               
               1-492, gnl|Mm7|chr11 (54320845-54321315)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mga (0.480615)
               

               
               mgm (0.360685)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.480615)
               

               
               mgm (0.360685)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)

	1-492, gnl\|bosTau2\|chr7 (20570843-20570380)
	1-492, gnl\|Hg17\|chr5 (131314245-131313761)
	1-492, gnl\|Mm7\|chr11 (54320845-54321315)