Ss1.1-rmga20_o6.5
|
GAAGAAGGAGGAGATCTTAAAGACCACGTGTTTCATCTGTGGCTTGGAAAGAGACAAGTT
TGACAACAAGACTGTTACCTTTGAAGAGCACATCAAGGAGGAACACAACATGTGGCACTA
TCTGTGCTTTATCGTCCTGGTGAAAGTGAAGGACTCCACGGAGTACACTGGGCCTGAGAG
TTACGTGGCAGAAATGATCAAGGAAAGAAACCTCGATTGGTTCCCGAGGATGAGAGCCAT
GTCCCTGGTCAGCAGTGATTCTGAAGGAGAACAGAATGAGCTGAGGAATCTGCAGGAGAA
GCTGGAGTCCACCATGAAGCTTGTCACGAACCTTTCTGGCCAGCTGTCAGAGTTAAAGGA
TCAGATGACAGAACAAAGGAAGCAGAAACAAAGAATTGGTCTTCTAGGACATCCTCCTCA
CATGAACGTCAACCCACAGCAACCAGCCTAAGCAAATGAAATAAAGGAATCGTATTTACC
TAAGTTATTTTTAGTGTGGGTATGGCTAGTTAGTTCTGATTCACCCACAAAGGTTACATT
TATGCTTAGTATATTTGTAAATACTCAGTTTTATACTGTATGTATATGATTGCTAATCTA
AAGGTTTGGATATATGTATTGTAATTAGAACTGTTGGCATGAAATTTCATTTGTGCCAAA
AATATTAAAAATGCCTTTTTTGGAAGGACTGAAGAAAGCACCTGATTTGCACTTGAACCA
GATTATAGATTTAAAAGTATATGACATGTATTTTGTATTTAAAATTAGAATAGCCAGTAT
TTATGTTTTTTATAAAACTGTGCAATACCAATTATGCAATCACAATATATTTGTAACTCC
TGAGTATCCTAAGGGGAGTACACGTCTTTGAAGCTGGTATGTTAATAGTATGTAATAAAT
GGTTAAATACTAAATGATGCTGCTGCCAAAATCATATTAATAGTGAGTTTCAGGCCCCTG
GGCATTTTGGACCATATAATTATCCTGTGGTGATACTGTTTCTTGTTGCTCGTGGCATTA
GTGCCTCTGTCTTTCAGTGACAGTGCTCCAAGCCTATGAACTGTCAAGTCAGCATTCATT
TTAAGAAAAGCAACTTTAGTTTCAAAGATACTTTTAGGCTTCTGAATTGATCATTTAAAC
TATTTCTTTAAATAAGACAGCTAAATTAGAGACTTGACCTTAGCTTGCCAAGTTAATGAA
TTTTTTAAAGGGAACTTTTTATGCCATGTTGGGGCTAAATGCATACTGCTAACCAATCAA
TGTCATCTCCTAGGTGAATTTTGGTGTCACATTATAAAGAAATGAATAATTGATGGTCTC
TAGGTTATCTAGTCCAAACAGCAGAGCTGATTTTCTTTTTCTTCATCTGAACCAATATGC
TCCAGTAGCTAGGAAGTATATATATAGTCATAGAATGAAGAAATATGAGCTATCCCATTA
GAACGCATAGTTTGAACACTGACACGTTATTCTTGTGAAAGAGCCACATTTTGATTTTCT
TTGTCACATGATTTTGTTTCTTGATGGATGAAAAGTATGAAAGGAAACTTTTATATCTGT
TGCCTAGTTTTGTACATGGGTCTCATTTTACAACAGAATCTCTACAAAAAAAAAAAAAGT
TTAAAAGTGTATTGAAAGCAGAGTTCTGAAGTGAGTACTTAAAGTTTGTAAATGCATATA
TAAAAATATTTAATAAATGATGCAGAATAATAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGAAGGAGGAGATCTTAAAGACCACGTGTTTCATCTGTGGCTTGGAAAGAGACAAGTT
TGACAACAAGACTGTTACCTTTGAAGAGCACATCAAGGAGGAACACAACATGTGGCACTA
TCTGTGCTTTATCGTCCTGGTGAAAGTGAAGGACTCCACGGAGTACACTGGGCCTGAGAG
TTACGTGGCAGAAATGATCAAGGAAAGAAACCTCGATTGGTTCCCGAGGATGAGAGCCAT
GTCCCTGGTCAGCAGTGATTCTGAAGGAGAACAGAATGAGCTGAGGAATCTGCAGGAGAA
GCTGGAGTCCACCATGAAGCTTGTCACGAACCTTTCTGGCCAGCTGTCAGAGTTAAAGGA
TCAGATGACAGAACAAAGGAAGCAGAAACAAAGAATTGGTCTTCTAGGACATCCTCCTCA
CATGAACGTCAACCCACAGCAACCAGCCTAAGCAAATGAAATAAAGGAATCGTATTTACC
TAAGTTATTTTTAGTGTGGGTATGGCTAGTTAGTTCTGATTCACCCACAAAGGTTACATT
TATGCTTAGTATATTTGTAAATACTCAGTTTTATACTGTATGTATATGATTGCTAATCTA
AAGGTTTGGATATATGTATTGTAATTAGAACTGTTGGCATGAAATTTCATTTGTGCCAAA
AATATTAAAAATGCCTTTTTTGGAAGGACTGAAGAAAGCACCTGATTTGCACTTGAACCA
GATTATAGATTTAAAAGTATATGACATGTATTTTGTATTTAAAATTAGAATAGCCAGTAT
TTATGTTTTTTATAAAACTGTGCAATACCAATTATGCAATCACAATATATTTGTAACTCC
TGAGTATCCTAAGGGGAGTACACGTCTTTGAAGCTGGTATGTTAATAGTATGTAATAAAT
GGTTAAATACTAAATGATGCTGCTGCCAAAATCATATTAATAGTGAGTTTCAGGCCCCTG
GGCATTTTGGACCATATAATTATCCTGTGGTGATACTGTTTCTTGTTGCTCGTGGCATTA
GTGCCTCTGTCTTTCAGTGACAGTGCTCCAAGCCTATGAACTGTCAAGTCAGCATTCATT
TTAAGAAAAGCAACTTTAGTTTCAAAGATACTTTTAGGCTTCTGAATTGATCATTTAAAC
TATTTCTTTAAATAAGACAGCTAAATTAGAGACTTGACCTTAGCTTGCCAAGTTAATGAA
TTTTTTAAAGGGAACTTTTTATGCCATGTTGGGGCTAAATGCATACTGCTAACCAATCAA
TGTCATCTCCTAGGTGAATTTTGGTGTCACATTATAAAGAAATGAATAATTGATGGTCTC
TAGGTTATCTAGTCCAAACAGCAGAGCTGATTTTCTTTTTCTTCATCTGAACCAATATGC
TCCAGTAGCTAGGAAGTATATATATAGTCATAGAATGAAGAAATATGAGCTATCCCATTA
GAACGCATAGTTTGAACACTGACACGTTATTCTTGTGAAAGAGCCACATTTTGATTTTCT
TTGTCACATGATTTTGTTTCTTGATGGATGAAAAGTATGAAAGGAAACTTTTATATCTGT
TGCCTAGTTTTGTACATGGGTCTCATTTTACAACAGAATCTCTACAAAAAAAAAAAAAGT
TTAAAAGTGTATTGAAAGCAGAGTTCTGAAGTGAGTACTTAAAGTTTGTAAATGCATATA
TAAAAATATTTAATAAATGATGCAGAATAATAAAAAAAAAAAAAAAAA
|
|
gi|60688455|gb|AAH91346.1| |
Protein identifier
|
gi|60688455|gb|AAH91346.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
29-203, gnl|bosTau2|chr22 (17026695-17026869) |
|
29-203, gnl|canFam2|chr20 (15775489-15775282) |
|
29-203, gnl|danRer3|chr6 (20297387-20297190) |
|
29-203, gnl|dasNov1|scaffold_344 (189349-189574) |
|
29-203, gnl|echTel1|scaffold_320874 (41069-41292) |
|
29-203, gnl|fr1|chrUn (146468829-146469010) |
|
29-203, gnl|galGal2|chr12 (18461338-18461533) |
|
29-203, gnl|hg17|chr3 (4834741-4834967) |
|
29-203, gnl|Hg17|chr3 (4834752-4834927) |
|
29-203, gnl|loxAfr1|scaffold_1409 (15645-15871) |
|
29-203, gnl|mm7|chr6 (108617301-108617522) |
|
29-203, gnl|Mm7|chr6 (108617312-108617487) |
|
29-203, gnl|monDom2|scaffold_5 (30526195-30526401) |
|
29-203, gnl|oryCun1|scaffold_103228 (1051-1216) |
|
29-203, gnl|panTro1|chr2 (4953878-4954104) |
|
29-203, gnl|rheMac2|chr2 (56209467-56209245) |
|
29-203, gnl|rn3|chr4 (144247205-144247421) |
|
29-203, gnl|tetNig1|chr11 (9482380-9482189) |
|
29-203, gnl|xenTro1|scaffold_173 (1800607-1800790) |
| |
|
362-1710, gnl|bosTau2|chr22 (17055388-17056728) |
|
362-1710, gnl|Hg17|chr3 (4862820-4864181) |
|
362-1710, gnl|Mm7|chr6 (108643788-108645146) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
29-203, gnl|bosTau2|chr22 (17026695-17026869) |
|
29-203, gnl|canFam2|chr20 (15775489-15775282) |
|
29-203, gnl|danRer3|chr6 (20297387-20297190) |
|
29-203, gnl|dasNov1|scaffold_344 (189349-189574) |
|
29-203, gnl|echTel1|scaffold_320874 (41069-41292) |
|
29-203, gnl|fr1|chrUn (146468829-146469010) |
|
29-203, gnl|galGal2|chr12 (18461338-18461533) |
|
29-203, gnl|hg17|chr3 (4834741-4834967) |
|
29-203, gnl|Hg17|chr3 (4834752-4834927) |
|
29-203, gnl|loxAfr1|scaffold_1409 (15645-15871) |
|
29-203, gnl|mm7|chr6 (108617301-108617522) |
|
29-203, gnl|Mm7|chr6 (108617312-108617487) |
|
29-203, gnl|monDom2|scaffold_5 (30526195-30526401) |
|
29-203, gnl|oryCun1|scaffold_103228 (1051-1216) |
|
29-203, gnl|panTro1|chr2 (4953878-4954104) |
|
29-203, gnl|rheMac2|chr2 (56209467-56209245) |
|
29-203, gnl|rn3|chr4 (144247205-144247421) |
|
29-203, gnl|tetNig1|chr11 (9482380-9482189) |
|
29-203, gnl|xenTro1|scaffold_173 (1800607-1800790) |
| |
|
362-1710, gnl|bosTau2|chr22 (17055388-17056728) |
|
362-1710, gnl|Hg17|chr3 (4862820-4864181) |
|
362-1710, gnl|Mm7|chr6 (108643788-108645146) |
|
fco (1.25766) |
|
cbe (0.717703) |
|
aor (0.585823) |
|
liv (0.585137) |
|
gul (0.532765) |
|
kid (0.389206) |
|
ret (0.3862) |
|
sme (0.305437) |
|
spl (0.286369) |
|
fce (0.271592) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
sag (0.182715) |
|
rec (0.17307) |
|
mga (0.160205) |
|
lun (0.150489) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lyg (0.133103) |
|
tra (0.123092) |
|
fco (1.25766) |
|
cbe (0.717703) |
|
aor (0.585823) |
|
liv (0.585137) |
|
gul (0.532765) |
|
kid (0.389206) |
|
ret (0.3862) |
|
sme (0.305437) |
|
spl (0.286369) |
|
fce (0.271592) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
sag (0.182715) |
|
rec (0.17307) |
|
mga (0.160205) |
|
lun (0.150489) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lyg (0.133103) |
|
tra (0.123092) |
