Non-Coding RNA Search

Ss1.1-rmga22_a22.5

Sequence:


               
               TCTCTGGCGGACATGTTTCCAGAGATGAACGATATGCTGCGAGAAAAGGTAACTGGAAGG
AAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACCGGCTTCATAGCC
ATTCTGCTCATCACATTGTATGCAGGAGAAATCGAACTGGAGTGATAGGAAATGAAAGGT
GTGTTAATGGAGACATTTAATAAATAAAACAGCTCCAAAGGGATTTTTAAGCTGGATCCT
ATTTAGACCAAAGATAATTTTGTTTTTCAACCGTACATTGGGAAAACTGATTATTGGTTT
CAGATCTGTGAAATAAGCCATTATTTGTTGTTAAAAATGCTTCAAAAAAGCTTTCAGTTC
CAGTCTGAAGAGCCTGATAGATGAGATCTTTAGTAAATACCCACTTTTTTAAATGTGTCA
TGCCCACTAAAAATCATCACGAAGCAAGAAACATGCATTCCGTAATCCTTTAGACACCAA
GACCTGGATAAAAAAATGCAGAGTAGGCTGTATAAGCTTTTAAACCTCTCTGGTCGGATC
AAATGTTCAAGTAGTTTCAGAGTGGTTTTCTTTCAGTTAATTTGTTCTAGTGCTTTCACC
AGCATGTACATCAAAATGCGGACGAGGATGAAAAAGTATACAACACGGATGTAACTGATT
TCAAGGCCTTAGTGAACCCAGGAGAGAAAGATTACTCAGAGCTTTTACTTTGTTTTATAT
TTCAGTTAGGGACTGACTTGTAGGATTGTTTTAAGAACCATTCTAAAATAATATGAACTG
TGACATCAGGAAAGTTTTGTTAGCCCTACTACGTTCAGCCCTTGTTTGATATTTTATCTC
TAAGTGTAAACTCTACCAGAGTCCATTAAAAAGCCAGAATTGCTTTCTCGTGACTTAGGT
TGTGGTTATACCACAGCAAATGGCAATACAGTATGTAAAGATGGTGACAGTTCAGGTTTC
GGTATCCAAGTGGCCAATGTGTTTGCTTTGTAATTTATAGAAAGAAATTGAAGGTAATTT
TAAGCAATTTACTTTTAAAGATGAATACAACTATTTAGCAGAGGCTATTTTAAGTAAATA
CAAAATAACAGCTGCATGGCTGTATGTCAAAGACTGATTGACTTAAGAAATAGATGTTTC
TGATGGGTGATTGAGAGACATTCAGACGATACTTCTTTTGTGTTCAGTCTAGATTTTTCC
TATATGGTATTCCTTGCAAAAAAAAAAAAATTTCTACCCATTGTGGTTATTTTTCTACCA
ATTTTAAAAGTTAGGGCCTGTTTATTCATTTAGCAGATACGGAAAGTTGGTCTACAATTG
AACATCCCAACCCCAATTCACACTCCCACGTCTCTTAAGGAAAGATTTGACAGTGAGGAA
AATGACTGATAAAAGCCAACAGTGATCTCAAGAATTGCATTTTCTCACCAGCCATAAGAT
GGTGTCACATAGCAATAATGCAGGTGTGAAGAATACTTAACATGTGTGTTAGTATTAACA
TGTGTGTTAATGTACATTTTGCTCTATGACTGACAATTAAAAAATATTGTTTGACCAAAT
AGTAAACACCTTTGAAACCATGTATCGTGTCATTCATTATTCATTTTAAGAAATATCTTC
CTACACCACAGCTCACGGCAATGCCGGATCCTTAACCCACCGAGAGAGGCCAGGAATCGA
ACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGAGCCACAACGGAGACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTGGCGGACATGTTTCCAGAGATGAACGATATGCTGCGAGAAAAGGTAACTGGAAGG
AAAACCGATTTCACCTTCTTCATGATTCAGAATGCTGGAATGTTAACCGGCTTCATAGCC
ATTCTGCTCATCACATTGTATGCAGGAGAAATCGAACTGGAGTGATAGGAAATGAAAGGT
GTGTTAATGGAGACATTTAATAAATAAAACAGCTCCAAAGGGATTTTTAAGCTGGATCCT
ATTTAGACCAAAGATAATTTTGTTTTTCAACCGTACATTGGGAAAACTGATTATTGGTTT
CAGATCTGTGAAATAAGCCATTATTTGTTGTTAAAAATGCTTCAAAAAAGCTTTCAGTTC
CAGTCTGAAGAGCCTGATAGATGAGATCTTTAGTAAATACCCACTTTTTTAAATGTGTCA
TGCCCACTAAAAATCATCACGAAGCAAGAAACATGCATTCCGTAATCCTTTAGACACCAA
GACCTGGATAAAAAAATGCAGAGTAGGCTGTATAAGCTTTTAAACCTCTCTGGTCGGATC
AAATGTTCAAGTAGTTTCAGAGTGGTTTTCTTTCAGTTAATTTGTTCTAGTGCTTTCACC
AGCATGTACATCAAAATGCGGACGAGGATGAAAAAGTATACAACACGGATGTAACTGATT
TCAAGGCCTTAGTGAACCCAGGAGAGAAAGATTACTCAGAGCTTTTACTTTGTTTTATAT
TTCAGTTAGGGACTGACTTGTAGGATTGTTTTAAGAACCATTCTAAAATAATATGAACTG
TGACATCAGGAAAGTTTTGTTAGCCCTACTACGTTCAGCCCTTGTTTGATATTTTATCTC
TAAGTGTAAACTCTACCAGAGTCCATTAAAAAGCCAGAATTGCTTTCTCGTGACTTAGGT
TGTGGTTATACCACAGCAAATGGCAATACAGTATGTAAAGATGGTGACAGTTCAGGTTTC
GGTATCCAAGTGGCCAATGTGTTTGCTTTGTAATTTATAGAAAGAAATTGAAGGTAATTT
TAAGCAATTTACTTTTAAAGATGAATACAACTATTTAGCAGAGGCTATTTTAAGTAAATA
CAAAATAACAGCTGCATGGCTGTATGTCAAAGACTGATTGACTTAAGAAATAGATGTTTC
TGATGGGTGATTGAGAGACATTCAGACGATACTTCTTTTGTGTTCAGTCTAGATTTTTCC
TATATGGTATTCCTTGCAAAAAAAAAAAAATTTCTACCCATTGTGGTTATTTTTCTACCA
ATTTTAAAAGTTAGGGCCTGTTTATTCATTTAGCAGATACGGAAAGTTGGTCTACAATTG
AACATCCCAACCCCAATTCACACTCCCACGTCTCTTAAGGAAAGATTTGACAGTGAGGAA
AATGACTGATAAAAGCCAACAGTGATCTCAAGAATTGCATTTTCTCACCAGCCATAAGAT
GGTGTCACATAGCAATAATGCAGGTGTGAAGAATACTTAACATGTGTGTTAGTATTAACA
TGTGTGTTAATGTACATTTTGCTCTATGACTGACAATTAAAAAATATTGTTTGACCAAAT
AGTAAACACCTTTGAAACCATGTATCGTGTCATTCATTATTCATTTTAAGAAATATCTTC
CTACACCACAGCTCACGGCAATGCCGGATCCTTAACCCACCGAGAGAGGCCAGGAATCGA
ACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGAGCCACAACGGAGACTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12654945|gb|AAH01320.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12654945|gb|AAH01320.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               406-849, gnl|bosTau2|chr24 (22288656-22289086)
               

               
               406-849, gnl|Hg17|chr4 (103541136-103540622)
               


               
               994-1327, gnl|bosTau2|chr21 (29757212-29756898)
               

               
               994-1327, gnl|Hg17|chr4 (103540552-103540231)
               

               
               994-1327, gnl|Mm7|chr3 (135682178-135682499)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               406-849, gnl|bosTau2|chr24 (22288656-22289086)
               

               
               406-849, gnl|Hg17|chr4 (103541136-103540622)
               


               
               994-1327, gnl|bosTau2|chr21 (29757212-29756898)
               

               
               994-1327, gnl|Hg17|chr4 (103540552-103540231)
               

               
               994-1327, gnl|Mm7|chr3 (135682178-135682499)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               mga (2.56328)
               

               
               mgm (1.2624)
               

               
               lyg (1.06482)
               

               
               tra (0.984737)
               

               
               kid (0.648677)
               

               
               ret (0.3862)
               

               
               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (2.56328)
               

               
               mgm (1.2624)
               

               
               lyg (1.06482)
               

               
               tra (0.984737)
               

               
               kid (0.648677)
               

               
               ret (0.3862)
               

               
               ski (0.29347)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               cty (0.10408)

	406-849, gnl\|bosTau2\|chr24 (22288656-22289086)
	406-849, gnl\|Hg17\|chr4 (103541136-103540622)

	994-1327, gnl\|bosTau2\|chr21 (29757212-29756898)
	994-1327, gnl\|Hg17\|chr4 (103540552-103540231)
	994-1327, gnl\|Mm7\|chr3 (135682178-135682499)

	mga (2.56328)
	mgm (1.2624)
	lyg (1.06482)
	tra (0.984737)
	kid (0.648677)
	ret (0.3862)
	ski (0.29347)
	fcc (0.197785)
	sag (0.182715)
	tbr (0.154178)
	cag (0.151194)
	liv (0.146284)
	pty (0.142714)
	cty (0.10408)