Ss1.1-rmga24_k21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCCGTCCGCGCCATGTCCAAGAAAAAAGGACTGAGTGCAGAGGAGAAGAGAGCCCGCA TGATGGAAATATTTTTTGAGACGAAAGATGTATTTCAGTTAAAAGACATGGAGAAGATTG CTCCCAAAGAAAAAGGCATTACTGCTATGTCAGTAAAAGAAGTTCTTCAAAGCTTGGTTG ATGATGGCATGGTTGACTGTGAGAGAATTGGAACGTCTAATTATTATTGGGCTTTTCCAA GTAAAGCTCTTCACACCAGGAAGCGTAAATTGGAGGTTCTGGAATCTCAGTTATCCGAGG GAAACCAAAAGCACGCCAACCTACAGAAAAGCATCGAGAAAGCAAAAATTGGACGACATG AAACGGAAGAGCGAACCATGCTAGCAAAAGAGCTTTCTTCACTTCGAGACCAAAAAGAAC AGTTAAAGGCCGAAGTAGAAAAATACAAAGAATGTGACCCGCAGGTTGTGGAAGAAATGC GTCAAGCAAATAAAGTGGCCAAAGAAGCAGCTAACAGATGGACTGATAACATATTTGCCG TAAAATCTTGGGCCAAAAGGAAATTTGGGTTTGAAGAAAACAAAATCGATAAAAATTTTG GAATTCCAGAAGACTTTGACTACATAGACTAAAATGTTTGGTCTTGGTAAAGGATCTGTG TGCTTGTGAATGTGTACATTTTTTTATTTTTATACAGTTAAATGTACTGAATTGTCATTT ACCTGTAATTGTGTTTATTGTTTTATTCATTTTAAATAAAGTATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCCGTCCGCGCCATGTCCAAGAAAAAAGGACTGAGTGCAGAGGAGAAGAGAGCCCGCA TGATGGAAATATTTTTTGAGACGAAAGATGTATTTCAGTTAAAAGACATGGAGAAGATTG CTCCCAAAGAAAAAGGCATTACTGCTATGTCAGTAAAAGAAGTTCTTCAAAGCTTGGTTG ATGATGGCATGGTTGACTGTGAGAGAATTGGAACGTCTAATTATTATTGGGCTTTTCCAA GTAAAGCTCTTCACACCAGGAAGCGTAAATTGGAGGTTCTGGAATCTCAGTTATCCGAGG GAAACCAAAAGCACGCCAACCTACAGAAAAGCATCGAGAAAGCAAAAATTGGACGACATG AAACGGAAGAGCGAACCATGCTAGCAAAAGAGCTTTCTTCACTTCGAGACCAAAAAGAAC AGTTAAAGGCCGAAGTAGAAAAATACAAAGAATGTGACCCGCAGGTTGTGGAAGAAATGC GTCAAGCAAATAAAGTGGCCAAAGAAGCAGCTAACAGATGGACTGATAACATATTTGCCG TAAAATCTTGGGCCAAAAGGAAATTTGGGTTTGAAGAAAACAAAATCGATAAAAATTTTG GAATTCCAGAAGACTTTGACTACATAGACTAAAATGTTTGGTCTTGGTAAAGGATCTGTG TGCTTGTGAATGTGTACATTTTTTTATTTTTATACAGTTAAATGTACTGAATTGTCATTT ACCTGTAATTGTGTTTATTGTTTTATTCATTTTAAATAAAGTATAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 176-293, + strand, RNAz p=0.853681 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-293, + strand, RNAz p=0.853681 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 142-293, gnl|bosTau2|chr17 (3256205-3256054) | |
| 142-293, gnl|canFam2|chr15 (54185999-54186163) | |
| 142-293, gnl|danRer3|chr1 (23261842-23262004) | |
| 142-293, gnl|echTel1|scaffold_314551 (19319-19155) | |
| 142-293, gnl|fr1|chrUn (13567764-13567923) | |
| 142-293, gnl|galGal2|chr4 (20492798-20492962) | |
| 142-293, gnl|hg17|chr4 (154637222-154637384) | |
| 142-293, gnl|Hg17|chr4 (154637231-154637382) | |
| 142-293, gnl|loxAfr1|scaffold_38715 (29203-29039) | |
| 142-293, gnl|mm7|chr3 (84247383-84247220) | |
| 142-293, gnl|Mm7|chr3 (84247371-84247220) | |
| 142-293, gnl|monDom2|scaffold_9 (23595771-23595940) | |
| 142-293, gnl|oryCun1|scaffold_196571 (48624-48789) | |
| 142-293, gnl|panTro1|chr3 (171965866-171966028) | |
| 142-293, gnl|rheMac2|chr5 (145558811-145558973) | |
| 142-293, gnl|rn3|chr2 (175839968-175839805) | |
| 142-293, gnl|tetNig1|chr18 (8116629-8116791) | |
| 142-293, gnl|xenTro1|scaffold_93 (1316329-1316166) | |
| 365-482, gnl|bosTau2|chr17 (3215069-3214952) | |
| 365-482, gnl|canFam2|chr15 (54217403-54217523) | |
| 365-482, gnl|danRer3|chr8 (4997092-4996972) | |
| 365-482, gnl|dasNov1|scaffold_26157 (6601-6481) | |
| 365-482, gnl|echTel1|scaffold_266647 (4449-4329) | |
| 365-482, gnl|hg17|chr4 (154675976-154676096) | |
| 365-482, gnl|Hg17|chr4 (154675975-154676092) | |
| 365-482, gnl|loxAfr1|scaffold_15929 (9655-9775) | |
| 365-482, gnl|mm7|chr3 (84218256-84218136) | |
| 365-482, gnl|Mm7|chr3 (84218255-84218138) | |
| 365-482, gnl|oryCun1|scaffold_206564 (42621-42741) | |
| 365-482, gnl|panTro1|chr3 (172005008-172005128) | |
| 365-482, gnl|rheMac2|chr5 (145598529-145598649) | |
| 365-482, gnl|rn3|chr2 (175804760-175804640) | |
| 525-762, gnl|bosTau2|chr17 (3193946-3193706) | |
| 525-762, gnl|Hg17|chr4 (154693507-154693743) | |
| 525-762, gnl|Mm7|chr3 (84201380-84201150) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-293, gnl|bosTau2|chr17 (3256205-3256054) | |
| 142-293, gnl|canFam2|chr15 (54185999-54186163) | |
| 142-293, gnl|danRer3|chr1 (23261842-23262004) | |
| 142-293, gnl|echTel1|scaffold_314551 (19319-19155) | |
| 142-293, gnl|fr1|chrUn (13567764-13567923) | |
| 142-293, gnl|galGal2|chr4 (20492798-20492962) | |
| 142-293, gnl|hg17|chr4 (154637222-154637384) | |
| 142-293, gnl|Hg17|chr4 (154637231-154637382) | |
| 142-293, gnl|loxAfr1|scaffold_38715 (29203-29039) | |
| 142-293, gnl|mm7|chr3 (84247383-84247220) | |
| 142-293, gnl|Mm7|chr3 (84247371-84247220) | |
| 142-293, gnl|monDom2|scaffold_9 (23595771-23595940) | |
| 142-293, gnl|oryCun1|scaffold_196571 (48624-48789) | |
| 142-293, gnl|panTro1|chr3 (171965866-171966028) | |
| 142-293, gnl|rheMac2|chr5 (145558811-145558973) | |
| 142-293, gnl|rn3|chr2 (175839968-175839805) | |
| 142-293, gnl|tetNig1|chr18 (8116629-8116791) | |
| 142-293, gnl|xenTro1|scaffold_93 (1316329-1316166) | |
| 365-482, gnl|bosTau2|chr17 (3215069-3214952) | |
| 365-482, gnl|canFam2|chr15 (54217403-54217523) | |
| 365-482, gnl|danRer3|chr8 (4997092-4996972) | |
| 365-482, gnl|dasNov1|scaffold_26157 (6601-6481) | |
| 365-482, gnl|echTel1|scaffold_266647 (4449-4329) | |
| 365-482, gnl|hg17|chr4 (154675976-154676096) | |
| 365-482, gnl|Hg17|chr4 (154675975-154676092) | |
| 365-482, gnl|loxAfr1|scaffold_15929 (9655-9775) | |
| 365-482, gnl|mm7|chr3 (84218256-84218136) | |
| 365-482, gnl|Mm7|chr3 (84218255-84218138) | |
| 365-482, gnl|oryCun1|scaffold_206564 (42621-42741) | |
| 365-482, gnl|panTro1|chr3 (172005008-172005128) | |
| 365-482, gnl|rheMac2|chr5 (145598529-145598649) | |
| 365-482, gnl|rn3|chr2 (175804760-175804640) | |
| 525-762, gnl|bosTau2|chr17 (3193946-3193706) | |
| 525-762, gnl|Hg17|chr4 (154693507-154693743) | |
| 525-762, gnl|Mm7|chr3 (84201380-84201150) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| fty (0.17584) | |
| rec (0.17307) | |
| csp (0.161186) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| fty (0.17584) | |
| rec (0.17307) | |
| csp (0.161186) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| jca (0.11396) |