Non-Coding RNA Search

Ss1.1-rmga27_m24.5

Sequence:


               
               ATGCCCATATTATGTGTGTGTGTGTTTGGTGTTGTTCGTTTTGTTTTGTTTTTGTTTTTG
TTTTCCTTTTAAGTCACCAAATCTTTTTTAAAGATACTTTTTATTTGTGCCTCCTATTTA
TAATGCTGATGTTGGAAGCAGCAGTCATCCAACCACAGAGGGAGCTAAAGTTAACTAACC
AGAACTGTAGAAATCATTACACATGCCTTTGACAACAAAGGAAGTTCACAAGAAAAGTCA
TGTTGGCTTTTCCTCCACTAGATACAGGTTGGAGGTAGATGAATATTTGCCAAATGGAAA
AAAAAAGGACAGTGTGAGTCAGGAAAGACAAACTTTTCCAGCTTCTCAAAAGCCATGGAG
AGTAGAAACCAAACCCAACAGGGAAATAAAAAACCTTGAAAGTCTCACTTTCTAGTTGTC
CCATGCAGGGGTTGAAGTTTGACTCAGAGTAGAAAATATATCAGTGTGTTTTTTAGATCT
TCACATCTAGAGATGGATAACTATTCCAGTTTGATTTTTCAGGTAATGGAGAAAGCTGCT
AGTAATTTTAACCCCTGCCTAAAGAAGACAAATAATTTCATTTGGGAGCAAATACTTGTT
GCCTTGAAAAATAGCACTGTAATAGCCTATGATATAATTAGTTATAGAATAACCTTTATC
CCTTTTAAACTATGCAAATTATTAAATAATGTAAATTAGGACTCGATTAAAGATAGTTGA
TTATATTGCAATCAGATGGCATTCACAAACTTAACTGGAGCATATACAGATAAAATCTAT
TAGTCTAAGTTTTGTATGCTAACAGAAAAATATAATTTAGCTACCTATTCTAAAATGGTG
AATATTATTAATATTGTACTATAGGACTGGGAAGACTGCCTCCTTTTTTGAAGAGAGAGA
GATTAAGGATTTTTATAATTGTTTTTCATCAAATTTTAATATTTTTGTCAAATTTTTAGT
ATTTAATTTGTAAAACAGTTTGCTTTGTACTGGCATACAGAAAATAGGGTATTGATTTTA
AACTTTTTGAAGCCAAGTGATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCCATATTATGTGTGTGTGTGTTTGGTGTTGTTCGTTTTGTTTTGTTTTTGTTTTTG
TTTTCCTTTTAAGTCACCAAATCTTTTTTAAAGATACTTTTTATTTGTGCCTCCTATTTA
TAATGCTGATGTTGGAAGCAGCAGTCATCCAACCACAGAGGGAGCTAAAGTTAACTAACC
AGAACTGTAGAAATCATTACACATGCCTTTGACAACAAAGGAAGTTCACAAGAAAAGTCA
TGTTGGCTTTTCCTCCACTAGATACAGGTTGGAGGTAGATGAATATTTGCCAAATGGAAA
AAAAAAGGACAGTGTGAGTCAGGAAAGACAAACTTTTCCAGCTTCTCAAAAGCCATGGAG
AGTAGAAACCAAACCCAACAGGGAAATAAAAAACCTTGAAAGTCTCACTTTCTAGTTGTC
CCATGCAGGGGTTGAAGTTTGACTCAGAGTAGAAAATATATCAGTGTGTTTTTTAGATCT
TCACATCTAGAGATGGATAACTATTCCAGTTTGATTTTTCAGGTAATGGAGAAAGCTGCT
AGTAATTTTAACCCCTGCCTAAAGAAGACAAATAATTTCATTTGGGAGCAAATACTTGTT
GCCTTGAAAAATAGCACTGTAATAGCCTATGATATAATTAGTTATAGAATAACCTTTATC
CCTTTTAAACTATGCAAATTATTAAATAATGTAAATTAGGACTCGATTAAAGATAGTTGA
TTATATTGCAATCAGATGGCATTCACAAACTTAACTGGAGCATATACAGATAAAATCTAT
TAGTCTAAGTTTTGTATGCTAACAGAAAAATATAATTTAGCTACCTATTCTAAAATGGTG
AATATTATTAATATTGTACTATAGGACTGGGAAGACTGCCTCCTTTTTTGAAGAGAGAGA
GATTAAGGATTTTTATAATTGTTTTTCATCAAATTTTAATATTTTTGTCAAATTTTTAGT
ATTTAATTTGTAAAACAGTTTGCTTTGTACTGGCATACAGAAAATAGGGTATTGATTTTA
AACTTTTTGAAGCCAAGTGATCAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               33-470, gnl|bosTau2|chr7 (29550140-29549701)
               


               
               727-1044, gnl|bosTau2|chr7 (29549701-29549381)
               

               
               727-1044, gnl|Hg17|chr5 (139478841-139479153)
               

               
               727-1044, gnl|Mm7|chr18 (36668270-36668595)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-470, gnl|bosTau2|chr7 (29550140-29549701)
               


               
               727-1044, gnl|bosTau2|chr7 (29549701-29549381)
               

               
               727-1044, gnl|Hg17|chr5 (139478841-139479153)
               

               
               727-1044, gnl|Mm7|chr18 (36668270-36668595)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               bfe (0.449573)
               

               
               fco (0.314416)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               liv (0.146284)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               fco (0.314416)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               liv (0.146284)

	33-470, gnl\|bosTau2\|chr7 (29550140-29549701)

	727-1044, gnl\|bosTau2\|chr7 (29549701-29549381)
	727-1044, gnl\|Hg17\|chr5 (139478841-139479153)
	727-1044, gnl\|Mm7\|chr18 (36668270-36668595)

	bfe (0.449573)
	fco (0.314416)
	cmu (0.186393)
	mga (0.160205)
	liv (0.146284)