Non-Coding RNA Search

Ss1.1-rmga27_n14.5

Sequence:


               
               AAAAAAAGGTGATTAGTTTGTAGTTAATGTAGTCAGAGGGGGTGAGATGTAAGACAAACA
CTGTAGATTTTAAATCATTAAAGTCAAGTTCCATAGGGAGGTTTCTTACTGAGTACAGGA
GCTACGCCATCAAGCTGGTACATAATGGGATTCAGTATATATGTTCATAGTAAGTTTCTT
AACCAGAACGTCGTTTCAACCCCTCAGCAAAACACCCGTGGCCATCCTTCTGGAGGAACA
CACTTGAAATCAGGCATGTTCTTGATTCTTGCTGAGTTTATCCCCCCTCTTTTCCTATGG
TGGGGGCATCAGAGATGCAAAGCGTTAGTCAACAGATACTTGCATCCATTTCCAATTCAC
CGCTGTGTCTATGATTCAAGCTGTCGACCCCAGAACATCGTAATTCACGGAGGATTCTGT
CTGTGGTCTAAACCTTTCTAGAACTGGGAATGTCCTGACAGCGTGGTAACAGCCAATGAA
ATTATGAATCTTTTTGGTGTATCTTCCTACCTGATGTGCGTGCAAGCTCTAAGACACATA
TTTCCTTGACGAATATAGTGATGGTGGATTTATACCAGTGAATGTTCATGGTTGAAAGTC
TGCACTGACATTTTCTCATCAGTTGCTGGTAGGTAGGTGAGCCACTAGTGACCTCGACCA
GGTGAACTGCCCAGGACCCCAAGTGCCCCAGAGCAGGAAGCTTCACGTGACCCGGCGCTG
AGCCAACAAATGCAGACCCGGGGCCTCCATCTTAGCGTTTCACGGCATAAGTGACGTGTT
TTTAAAAAATGTGAATGACTGTAAAATAATCTATTTTTGGATGCATGTGTTTTCCAGGTG
GATACAGTTTGTAAACAATGTGAATAAAATATTTAACATGTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGGTGATTAGTTTGTAGTTAATGTAGTCAGAGGGGGTGAGATGTAAGACAAACA
CTGTAGATTTTAAATCATTAAAGTCAAGTTCCATAGGGAGGTTTCTTACTGAGTACAGGA
GCTACGCCATCAAGCTGGTACATAATGGGATTCAGTATATATGTTCATAGTAAGTTTCTT
AACCAGAACGTCGTTTCAACCCCTCAGCAAAACACCCGTGGCCATCCTTCTGGAGGAACA
CACTTGAAATCAGGCATGTTCTTGATTCTTGCTGAGTTTATCCCCCCTCTTTTCCTATGG
TGGGGGCATCAGAGATGCAAAGCGTTAGTCAACAGATACTTGCATCCATTTCCAATTCAC
CGCTGTGTCTATGATTCAAGCTGTCGACCCCAGAACATCGTAATTCACGGAGGATTCTGT
CTGTGGTCTAAACCTTTCTAGAACTGGGAATGTCCTGACAGCGTGGTAACAGCCAATGAA
ATTATGAATCTTTTTGGTGTATCTTCCTACCTGATGTGCGTGCAAGCTCTAAGACACATA
TTTCCTTGACGAATATAGTGATGGTGGATTTATACCAGTGAATGTTCATGGTTGAAAGTC
TGCACTGACATTTTCTCATCAGTTGCTGGTAGGTAGGTGAGCCACTAGTGACCTCGACCA
GGTGAACTGCCCAGGACCCCAAGTGCCCCAGAGCAGGAAGCTTCACGTGACCCGGCGCTG
AGCCAACAAATGCAGACCCGGGGCCTCCATCTTAGCGTTTCACGGCATAAGTGACGTGTT
TTTAAAAAATGTGAATGACTGTAAAATAATCTATTTTTGGATGCATGTGTTTTCCAGGTG
GATACAGTTTGTAAACAATGTGAATAAAATATTTAACATGTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               574-680, - strand, RNAz p=0.923922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-680, - strand, RNAz p=0.923922

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-883, gnl|bosTau2|chr15 (39365884-39365008)
               

               
               1-883, gnl|Hg17|chr11 (34457932-34456916)
               

               
               1-883, gnl|Mm7|chr2 (103300873-103301773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-883, gnl|bosTau2|chr15 (39365884-39365008)
               

               
               1-883, gnl|Hg17|chr11 (34457932-34456916)
               

               
               1-883, gnl|Mm7|chr2 (103300873-103301773)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               mcp (0.511945)
               

               
               sag (0.182715)
               

               
               nmm (0.132802)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               mcp (0.511945)
               

               
               sag (0.182715)
               

               
               nmm (0.132802)

	1-883, gnl\|bosTau2\|chr15 (39365884-39365008)
	1-883, gnl\|Hg17\|chr11 (34457932-34456916)
	1-883, gnl\|Mm7\|chr2 (103300873-103301773)

	mgp (0.692042)
	mga (0.64082)
	mcp (0.511945)
	sag (0.182715)
	nmm (0.132802)