Non-Coding RNA Search

Ss1.1-rmga34_k23.5

Sequence:


               
               GAAAAATCTTCAAGAACAGACCAGACCAAAGCCTGAATTTAACATCCGGAAACCTGAGTC
CACTGTCCCTTCCAAAGCAGTGGTGATACACAAGGCCAGATATAGAGATGATATGGTAAA
GGATGACTATGAGGATGATGCCCATGTTTTCCGGAAAGCGGCCAACGACATCACATCCCA
GCTGGAGATTAACTTTGGTAACCTCCCTCGTCCCGGGCGTGGAGCCAGAGGTGGCACCCG
GGGAGGCCGGGGAAGGATCAGAAGGGCAGAAAACTACGTCCCCAGAGCAGAAGTGGTGAC
ACAAGATGTCGCTCCAAACCCAGATGACCCTGAAGACTTTCCTGCTCTGGCATGAGCGCC
CGATTTCCTTGGCCACATCCAACAGCACTGGCCAACCTACCAAGAAGACTTCTCTTGCTC
TGGGGAAGAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTTCCCGTGTAGTTTGAAT
TCCTTGCACTTCTTTGACCTGGGCTTTGGGGGTCGGGGCGGGCATAGGGATTTCTCCAGA
TGCTAGAGAGCAGCAGTTCCAGTCAGGGGTGAGTCTGGCACTTTCCCAAGAAGATGAGAA
TGGGGATTATTTTTGTACGTCAGGACCTCCNGGTGAAGTTCAGAAATAATGTTTAAAATA
TGTATATAGAGATTGTATTGGAGCCTCCACCGAAGCATGGAGCATAAAGCGAAGTTGTAA
AATAGAATCTTTCGAGACCACTGAGTGAGTGGTGCAGCTCTCANAAGGCCGAGTCCTTCA
GTATTAGCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATCTTCAAGAACAGACCAGACCAAAGCCTGAATTTAACATCCGGAAACCTGAGTC
CACTGTCCCTTCCAAAGCAGTGGTGATACACAAGGCCAGATATAGAGATGATATGGTAAA
GGATGACTATGAGGATGATGCCCATGTTTTCCGGAAAGCGGCCAACGACATCACATCCCA
GCTGGAGATTAACTTTGGTAACCTCCCTCGTCCCGGGCGTGGAGCCAGAGGTGGCACCCG
GGGAGGCCGGGGAAGGATCAGAAGGGCAGAAAACTACGTCCCCAGAGCAGAAGTGGTGAC
ACAAGATGTCGCTCCAAACCCAGATGACCCTGAAGACTTTCCTGCTCTGGCATGAGCGCC
CGATTTCCTTGGCCACATCCAACAGCACTGGCCAACCTACCAAGAAGACTTCTCTTGCTC
TGGGGAAGAGAGTCAGACTCTAAGAACAATAGATGTTGCTTTTTCCCGTGTAGTTTGAAT
TCCTTGCACTTCTTTGACCTGGGCTTTGGGGGTCGGGGCGGGCATAGGGATTTCTCCAGA
TGCTAGAGAGCAGCAGTTCCAGTCAGGGGTGAGTCTGGCACTTTCCCAAGAAGATGAGAA
TGGGGATTATTTTTGTACGTCAGGACCTCCNGGTGAAGTTCAGAAATAATGTTTAAAATA
TGTATATAGAGATTGTATTGGAGCCTCCACCGAAGCATGGAGCATAAAGCGAAGTTGTAA
AATAGAATCTTTCGAGACCACTGAGTGAGTGGTGCAGCTCTCANAAGGCCGAGTCCTTCA
GTATTAGCAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               180-298, + strand, RNAz p=0.640767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-298, + strand, RNAz p=0.640767

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               113-298, gnl|bosTau2|chr8 (45440900-45440715)
               

               
               113-298, gnl|Hg17|chr9 (96329926-96330111)
               

               
               113-298, gnl|Mm7|chr13 (62007705-62007890)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-298, gnl|bosTau2|chr8 (45440900-45440715)
               

               
               113-298, gnl|Hg17|chr9 (96329926-96330111)
               

               
               113-298, gnl|Mm7|chr13 (62007705-62007890)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               mga (0.160205)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               mga (0.160205)

	113-298, gnl\|bosTau2\|chr8 (45440900-45440715)
	113-298, gnl\|Hg17\|chr9 (96329926-96330111)
	113-298, gnl\|Mm7\|chr13 (62007705-62007890)